Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016580.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value seq9745 434 2e-118 >seq9745 Length=7305 Score = 434 bits (480), Expect = 2e-118 Identities = 727/1043 (70%), Gaps = 35/1043 (3%) Strand=Plus/Minus Query 1418 TTATGAAGAGTCCACGCCTTCAGAGATGCATTTTCTTGTTTGTCTAGGAAGTCTTTATAA 1477 |||||| ||| ||| | ||| | || ||| || | | || ||| || || ||||||||| Sbjct 6844 TTATGA-GAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAA 6786 Query 1478 CTAGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACA 1537 || | |||||||||||| || | ||||| || ||||| ||||||| || || Sbjct 6785 CTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAG 6726 Query 1538 GGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAACTCTTTCCAA 1597 |||||||||||| | | || ||||||| || |||| |||||| || || || || || Sbjct 6725 GGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAA 6666 Query 1598 TGTTTCATCTTTAGATAATGCGGACTGACATCATCAATGACGTTATATTGAACAGTATTT 1657 ||||| || |||| ||||| || | |||||||||||| || || ||| Sbjct 6665 TGTTT------TAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTG 6612 Query 1658 GAATATACTTTAGAATTAAAATCAAGATGTCCGCTCAAATAATTATGTGGGCCTAGTGCA 1717 || ||| | | | |||| ||| |||| || ||||| |||||||||| || Sbjct 6611 TTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGAT 6552 Query 1718 CGAGCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAATACTAATAGGTCTT 1777 | |||||| || || ||||| |||| | || ||||| | | ||||| ||||||| Sbjct 6551 CTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGG 6492 Query 1778 TCTGGCCGCGCAGCGGAATCCATACCAAAATAAGCATCAGCCCATTCTTGCATCTCGTCA 1837 | |||| | ||| || | || ||| | | ||| |||| ||||| | || Sbjct 6491 TGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCC 6435 Query 1838 GGGACATTAGTGAATGAGGAGAGTCGAAACGGAGGAACCCA-----CGGCTCCGGAGCCT 1892 || || || | |||| | | ||| |||| ||| | | | | ||||||| Sbjct 6434 GGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGT--GGAGCCT 6377 Query 1893 TACTGAAAATTCTATCTAAATTAGAATTTAAATTATGAAATTG-AAATAAGTATTTCTCT 1951 ||| || |||| ||||||| |||||| ||||||| | |||||| || | | | Sbjct 6376 G---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTT-T 6321 Query 1952 GGGAGTTTCTCCCTTATTATTTGCATAGCCGTTTCTTTAGATGGGGCGTTCAGAGCCTCT 2011 ||| |||| ||||| ||||| | | || | | |||||| | || || || ||| Sbjct 6320 GGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCT 6261 Query 2012 GCGGCAGCGTCATTAGCTGACTGGCAACCTCCTCTAGCACTT------CGTCCGTCGATC 2065 ||| | | |||||||| || || ||| ||||| | | || | ||| || ||| Sbjct 6260 GCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATC 6201 Query 2066 TGAAATTCTCCCCATTCGAGAGTATCCCCGTCCTTGTCGATGTAGGACTTGACGTCAGAC 2125 || ||||||||||| || | ||||| |||| ||| ||||| || ||||| |||| || Sbjct 6200 TGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAG 6141 Query 2126 GATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTTGTTGGGGATACCATG 2185 |||||| ||||||| ||||| ||||||||||||||||| || ||||| || || | Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2186 TCGAAGAGTCGCTGATTCGTGCAGACGAACTTTCCTTCGAACTGAATAAGCACATGGAGA 2245 ||||||| || | ||||||||| | |||| |||||||| || |||||||| |||||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2246 TGAGGTTCCCCATTTTCATGGAGTTCTCTACAGATTTTAATGTATTTCTTGTTTGTTGGA 2305 ||||||||| |||||||| |||||| || || || ||||||||||||||| ||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2306 GTATTTATTTTCTG--TAATTGAGAAAGAGCTTCTTCTTTTGAGAGAGAACAATGAGGAT 2363 ||||||| || || ||||||||| ||||||| ||||||| ||||| || || |||| Sbjct 5960 GTATTTAGGTTTTGAATAATTGAGA--GAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2364 ATGTGATGAAGTAATTCTTTGAAGAAATGCGAAAGCGTTTTGGAGCAGATGGCATTTTTG 2423 |||| | || ||| || |||||||||||||| || | | | |||||| |||| Sbjct 5902 ATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG---AGAACTCGTTGGCATATTTG 5846 Query 2424 AAATAATAAGGGTGTCACCAATT 2446 || | | || ||||||||||| Sbjct 5845 TAAGTAAATGGATGTCACCAATT 5823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7944551923560