Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016649.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq9745 609 4e-171 >seq9745 Length=7305 Score = 609 bits (674), Expect = 4e-171 Identities = 723/976 (74%), Gaps = 12/976 (1%) Strand=Plus/Minus Query 1602 CGAAGATCGCATTCTTGTCTGTCCAGTTCTTTAGTGCAGTGTTCTTTTCCTCGTCCAGGA 1661 |||||| ||||| || | |||| ||| | || | |||||| || ||||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1662 ATTCTTTATAACTGCTGTTAGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTT 1721 | ||||||||||| ||| || || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1722 TAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1781 ||| || || ||||| ||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1782 ACTCTTTAAAGTGTTTGAGGAAGTGCGGATCAACGTCATCAATGACGTTATACCAAGCGT 1841 | || ||||| ||||| | | |||||||||||| |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1842 CATTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGGGCCTA 1901 |||| ||||| |||||||||| ||| |||| || ||||| || || |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1902 AAGACCTAGCCCACATTGTTTTCCCAGTACGACTGTCGCCCTCAATTACTATACTTTGAG 1961 | || |||||||| |||||||||||||| | | || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1962 GTCTCAGGGGCCGCGCAGCGGCGTCGACAACATTTACACACGCCCACTCTTCAAGTTCTT 2021 ||| | |||| | ||| ||| ||||| ||| | |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2022 CTGGAACTTGATCGAAAGAAGAAGACGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCT 2081 | || || | | || | | || ||||||||||||||| || ||||| ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2082 GAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGTAGTACAAAATCTTTAGGAG 2141 | || ||| | || | ||| |||||||| ||||||| ||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2142 CTAGTTCCTTAATGA-CTCTAAGAGCCTCCGACTTACTTCCCGCGTTAAGTGCTGCGGCG 2200 | |||| |||| | ||||||| || | | ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2201 TAAGCGTCGTTGGCTGTCTGTTGCCCTCCTCTTG------CTGATCTTCCATCGATCTGA 2254 ||| | || || || | ||||| || ||||||| | ||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2255 AATTCTCCCCAGTCGAGAATGTCCCCGTCCTTGGCGATGTAGGACTTGACGTCGGAGCTG 2314 ||||||||||| || | | || |||| ||| |||| || ||||| |||| ||||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2315 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACGAGGTCG 2374 |||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2375 AAGAATCTGTTATTTTTGCACTTGTATTTGCCTTCGAACTGGATGAGCACGTGAAGATGA 2434 |||||||||||||| |||| |||| || |||||||| ||||| |||||||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2435 GGTTCCCCATTTTCATGAAACTCTCTGCAGATTCTAATGTATTTTTTGTTTACTGGGGTT 2494 ||||||| ||||||||| |||||||| || | |||||||| |||||||||||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2495 TGTAGGTTTTG--TAATTGGGAAAGTGCCTCCTCTTTAGTAAGAGAGCATGTGGGATAAG 2552 | ||||||||| |||||| || || | |||||||| ||||||||||| |||||| | Sbjct 5957 TTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2553 TGATGAAATAATTTTT 2568 | | ||| |||||| Sbjct 5899 TTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610296498160