Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016660.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq9745 614 9e-173 >seq9745 Length=7305 Score = 614 bits (680), Expect = 9e-173 Identities = 719/967 (74%), Gaps = 12/967 (1%) Strand=Plus/Minus Query 1603 CGAAGATCGCATTCTTCACTGCCCAGTTCTTTAGTGCGGTGTTCTTTTCCTCATCTAGGA 1662 |||||| ||||| | | |||||| ||| | || | |||||| || || || || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1663 ATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTTGGTATTCCGCCTT 1722 | ||||||||||| |||||| || |||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1723 TAATTTGAACTGGCTTCCCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGA 1782 ||| || || ||||| ||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1783 ATTCTTTAAAGTGCTTGAGGAAGTGCGGATCTACGTCATCAATGACGTTATACCAAGCGT 1842 |||| ||||| || || | | ||||||| |||| |||||||||||| ||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1843 CGTTACTGTACACCTTTGGGCTTAGATCTAAATGCCCACATAAATAGTTATGTGGGCCTA 1902 | || ||||| |||||||||| ||| |||| || ||||| || || |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1903 AAGACCTAGCCCACATTGTCTTCCCAGTACGACTGTCACCCTCAATCACTATACTTTGAG 1962 | || |||||||| ||||| |||||||| | | ||||| || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1963 GTCTCAAGGGCCGCGCAGCGGCACTGACGATGTTCTCGGCAGCCCACTCTTCAAGTTCTT 2022 ||| |||| | ||| |||||| || | ||| || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2023 CTGGAACTTGATCAAAGGAAGAGGAAGAAAAAGGAGAGACATAAACCTCCATTGGAGGTG 2082 | || || | | ||| | | ||| ||||||||| ||||| | | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2083 TAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAGTACATAATCTTTTGGTG 2142 || ||| |||| |||||||||||||| ||||||| ||| |||||||||||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2143 CTAATTCTTTAATGAT-TCTAATAGCCTCTGACTTACTGCCTGCGTTAAGTGCTGCGGCG 2201 | ||| |||| || ||||| || ||| ||| || | || || ||| | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAA-GGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2202 TAAGCGTCATTGGCTGACTGTTGTCCCCCTC------TTGCAGATCTTCCATCGATCTGA 2255 ||| | ||||| || || ||||| ||||||| |||||||||||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2256 AACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCGACGTATGACTTGACGTCCGAGCTT 2315 || |||||||| || | || ||||||| |||||||| || ||||| |||| ||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2316 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGACCAAGTCG 2375 |||||| ||||||| ||||| ||||||||||||| |||||||||||| ||||| | ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2376 AAGAATCGGTGATTCGTGCACTGGTACTTTCCCTCGAACTGGATGAGCATGTGTAGATGA 2435 ||||||| || ||||||||| |||||| || ||||| ||||| |||| ||| ||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2436 GGTTTCCCATTTTGATGAAGCTCTCTGCAGATCTTGATATATT--TTATTGAAGTTGGGG 2493 |||| || |||| |||| |||||||| |||||||| |||| || || | ||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTA--CTGGGG 5960 Query 2494 TATTTAGGTTTTTGATTTGGGAAAGTGCTTCCTCTTTTGTTAGAGAGCAGTCGGGATAAG 2553 |||||||||||| || || || |||||||||||||| |||||||||| |||||| | Sbjct 5959 TATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2554 TGAGGAA 2560 | || || Sbjct 5899 TTAGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8578594375560