Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016965.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq9745 457 2e-125 >seq9745 Length=7305 Score = 457 bits (506), Expect = 2e-125 Identities = 669/943 (71%), Gaps = 16/943 (2%) Strand=Plus/Minus Query 1645 GCTGTATTTTTCTGTTCATCCAAGAATTCTTTATAGCTAGAGTTGGGTCCTGGATTGCAG 1704 |||| || || | ||| || | || |||||||| || |||||||||||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1705 AGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGAT 1764 || ||||| ||||| || |||||||||| || || |||||||||||| || |||| | Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1765 TGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGCGGATCTACG 1824 ||||| || |||| ||||||||||||||| ||||| || |||| ||| ||||||| ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1825 TCATCAATGACGTTGTACCAAGCATCATTATTGTAGACCTTAGGGCTAAGGTCTAGGTGA 1884 | |||||||||||||||||| |||||||| ||||| || ||||| | || ||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1885 CCACACAGATAATTATGTGGTCCCAACGATCTAGCCCACATGGTCTTACCCGTTCTACTA 1944 || || | ||||| ||||| || || ||||||||||| || || || || |||||| Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1945 TCACCTTCTATCACTATACTTATGGGTCTTAACGGCCGCGCAGCGGCACTGACGACATTC 2004 |||||||||| |||||||| || |||| |||| | ||| |||||| || || || Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2005 TCGGCAGCCCACTCCTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGAAAGAAAAGGA 2064 || || |||| || | ||| || || || | | ||| | | || | ||||||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2065 GAAACATAAACCTCCATAGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAATTATGA 2124 |||||||| | | |||| || ||| |||| ||||| | |||||| ||||| Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2125 TACTGTAATACATAATCCTTTGGAGCTTTCTCCTTTAATATATTGAGGGCCTCAGCTTTG 2184 | |||| |||||| ||||| ||| ||| | | ||| | | ||| | | ||| Sbjct 6341 AAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTA 6282 Query 2185 GACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACTCTCTC----- 2239 ||||| ||||| | || || || || | || || || ||||| || | ||| Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2240 -TAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTCTCC 2298 | || ||||||||||| | ||||| |||| ||||| ||||||| ||||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2299 ATGTAGGTTTTGACATCTGAAGAGCT---CTTAGCTCCCTGAATGTTCGGATGGAAATGT 2355 || || | || || | | ||||| ||| ||||||| ||||| |||||||||||| Sbjct 6161 ATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGT 6105 Query 2356 GCTGACCTGGTTGGGGATGTGAGGTCGAAGAATCTATTGTTTCTGCACTGGAATTTACCT 2415 | |||||||||||| || || ||||||||||| || || |||| | | || ||| Sbjct 6104 GTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCT 6045 Query 2416 TCGAATTGGATGAGCACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAAATT 2475 ||||||||||| ||||| || | |||| || | ||| ||| ||||||||||| Sbjct 6044 TCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATC 5985 Query 2476 CTAATAAATTTTTTG--GATGTGGGTGTTTGGATATTTAACAATTGGGAAAGTGCCTCTT 2533 | || |||| ||| | |||| ||| | | || || |||| || || || || | Sbjct 5984 TTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCT 5927 Query 2534 CTTTAGCTAGAGAGCACTTGGGATAAGTGAGAAAATAATTTTT 2576 |||| | |||||||| | |||||| || |||||| |||||| Sbjct 5926 CTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8648339045280