Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016984.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq9745 405 9e-110 >seq9745 Length=7305 Score = 405 bits (448), Expect = 9e-110 Identities = 514/711 (72%), Gaps = 8/711 (1%) Strand=Plus/Minus Query 1651 TTTTTCTCTTCATCCAAGAACTCTTTATAGCTAGAATTGGGTCCTGGATTGCAGAGGAAG 1710 || || ||||| || | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1711 ATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTGTTGGATTGCCAG 1770 || | ||| || || ||||||| || || |||||||||||| || | || | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1771 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGATAATGCGGATCAACGTCATTA 1830 || |||| ||||||||||||||||||||| || |||| |||| |||||||||||| || | Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1831 ATGACGTTATACCAGGCGTCGTTATTGTAGACCTTTGGGCTAAGGTCGAGATGTCCACAC 1890 |||||||| |||||||| || || ||||| |||||||| | || ||| || || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1891 AAATAGTTGTGTGGTCCCAGGGACCTGGCCCACATTGTCTTCCCCGTTCTACTCTCACCC 1950 || || |||||||| || | || || ||||| ||||| ||||| |||||| |||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1951 TCCAACACTATACTCATGGGTCTTAAAGGCCGCGCAGCGGCACTGACAACGTTCTGTGCA 2010 || | ||||||||||| |||| ||||| | ||| |||||| |||||||| | | || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2011 GCCCACTCCTCAAG-TTCTGTCGGAACTTGATCAAAANNNNNNNNNNNNNNNNNNGAAAC 2069 |||| || | ||| ||| ||| || | | ||| ||||| Sbjct 6455 ACCCAGTCTTGAAGAATCT-CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAAC 6397 Query 2070 ATAAACCTCCGCTGGAGGTTGAAAAATCCTATCTAAATTAGATTTTAAATTATGATATTG 2129 ||| | | | ||||| || || ||| |||| ||||||| ||||| ||||| | | Sbjct 6396 ATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACG 6337 Query 2130 AAAAATAAAATCTTTGAGGAGTTTCTCCCTTATTATTGCTAAAGCTGCTTCAGCCGAACC 2189 ||| | ||||||| || |||| ||||| ||||| |||| |||||| || || Sbjct 6336 TAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCC 6277 Query 2190 CGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTC------GACC 2243 | ||||| ||| ||||| | |||||||||| | |||||||| |||| | Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2244 ATATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTA 2303 | |||||||||| ||||| || | ||||| || || ||| | || ||||||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2304 GGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTG 2354 ||||| || | |||||||| ||| ||||||| | |||||| ||||| || Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8600785861380