Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq9745 306 6e-80 >seq9745 Length=7305 Score = 306 bits (338), Expect = 6e-80 Identities = 646/956 (68%), Gaps = 31/956 (3%) Strand=Plus/Minus Query 1564 AGATGCATTTTCCTCTTTGTCGAGGAAATATTTATAACTGGCCCCCTCTCCTGGATTACA 1623 || ||| || | |||| ||| || || | ||||||||| | ||||||||| || Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1624 TAGCACAATTGATGGGATACCTCCTTTAATTTGAACTGGCTTCCCGTATTTGCAGTTGCT 1683 || | |||| || || || ||||||| || || ||||| |||||| | | || Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1684 TTGCCAGTCTTTCTGGGCCCCAATGAGCTCTTTCCAGTGCTTTAGCTTTAGATATTGCGG 1743 ||||| || | | |||||| |||| || || | || |||| ||| |||| Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGG 6649 Query 1744 AGTGACATCATCAATGACGTTATATTCCGCTTCATTTGAATAAACCCTAGAATTGAAATC 1803 | || | |||||||||||| || || ||||| || | | | | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1804 CAGATGTCCACTCAAATAATTATGTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGT 1863 ||| || | || ||||| |||||||| |||| | |||||| || || ||||| || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1864 TCGACTATCACCCTCGACGATGATACTAATAGGTCTCTCCGGCCGCGCAGCGGCACCTCT 1923 || | ||||| || || | ||||| ||||||| | |||| | ||| ||||| | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---T 6472 Query 1924 TCCAAAATAATCATCAGCCCATTCTTGCATATCTTGTGGGACGTTAGTGAATGAGGAGAG 1983 ||| | || ||| |||| ||||| | | | || ||||| | |||| | Sbjct 6471 CACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGA 6412 Query 1984 TGGAAACGGAGGAACCCAT---GGATTCGGAGCCTTACTAAATATCCTGTCCAGATTACT 2040 | ||| |||| ||| || | | ||||||| |||||| | |||| |||| Sbjct 6411 TACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGG---AATATCATATCCAAATTAGC 6355 Query 2041 GGACAGATTGTGATACTGGAAG--AGAAACTTCTCCGGAAGTTTCTCTCGGATTATTTGC 2098 | | ||| | | || | || ||| | || |||| || | ||||| | Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTT--GGGCGTTTTTCCCTAATTATCTCT 6297 Query 2099 ATCGCAGCTTGTTTGCTGGGTGCATTTATTGCCTCTGCGGCAGCGTCGTTAGCAGTCTGC 2158 | || ||| ||| | ||||| || |||||| | | || ||||| | || Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2159 TGACCTCCTCTAG------CAGATCTGCCGTCGATCTGGAATTCACCCCATTCGAGAGTA 2212 ||||| ||||| | ||||||| || || ||||||||||| ||||| || | ||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2213 TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTT 2272 ||||||| ||| ||||| || ||||| |||| ||| |||||| ||||||| |||||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2273 GGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTTGTG-AT 2331 ||||||||||||| |||||||||||| || || | ||||| ||||| | ||| ||| || Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2332 CTGTGCTTTGCCTTCGAGTTGGATAAGCACGTGGAGATGAGGTTGCCCATCTTCGTGTAA 2391 ||| | || ||||||| ||||||||||||||||||| |||||| || | ||| || Sbjct 6056 GTGTAC-TTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGC 5998 Query 2392 CTCTCGGCAGATTTTGATGTATTTCTTATTTGATGGAAGAGATAGGGTTTG--TAATTGG 2449 |||| ||| || |||||||||||||| ||| ||| | |||| |||| ||||| Sbjct 5997 TTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT-- 5940 Query 2450 GAAAGTGCTGCTTCTTTCGAAATAGAGCACTGTGGATATGTGAGAAATATATTTTT 2505 || || ||| | ||||| | || |||||| || |||||||| ||||| |||||||| Sbjct 5939 GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8372530578660