Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_016999.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq9745 158 2e-35 >seq9745 Length=7305 Score = 158 bits (174), Expect = 2e-35 Identities = 316/458 (69%), Gaps = 24/458 (5%) Strand=Plus/Minus Query 2071 ATTTAACGCCTTTGCATATGTATCGTTAACTGTCTGTTGACCTCCTCGAG------CAGA 2124 ||||| || | ||| || ||| ||| | | |||||||| |||| | |||| Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2125 TCGTCCGTCGATCTGAAAATCACCCCATTCGACGTAATCTCCGTCCTTCTCAATATATGA 2184 || ||| || ||||| || || ||||| || | |||||||| |||||| ||||| || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2185 TTTGGCGTCGGAGGATGACTTGCATGATTCGTAT-TTTCCATGACAAACATTTGAATGAC 2243 || ||| |||| || || | | | |||| ||| ||| || | || |||| Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCT-GTATGTTTGGATGGAAA---TGTGT-TGAC 6099 Query 2244 TGGGATGTCG---CAAG-TCGAAGAATCTGCAATTCGTGCATGTGAACTTACCTTCGAAT 2299 || || | |||| |||||||||||| ||||||||||||| |||| ||||||||| Sbjct 6098 CTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAAT 6039 Query 2300 TGCAGCAAAGCA--TGGAGATGAGGCTCCCCATTTCCGTGTAATTCTCTGCATACACGGA 2357 || | ||||| |||||| |||| |||| ||| | || ||||||||| | || Sbjct 6038 TGGAT--AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGA 5981 Query 2358 TATATTTCTTGTTTGTAGGTGTATCTAATGCTAGA--AGTTGAGCAAGTGCCTCTTCTTT 2415 | |||||||||||| || |||| || | || | ||||| || || || ||||| Sbjct 5980 TGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAG--AGAGCTTCCTCTTT 5923 Query 2416 GGAGATAGAGCACTTGGGATAAGTAAGGAAATAATTTTTGGACTGAATTTTAAAACGTCT 2475 | | |||||| | |||||| || || ||| |||||| || ||| |||||| Sbjct 5922 TGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGA 5863 Query 2476 GGGCGGTGGCATATTTGTAAATAAAAGGATGTCTCCAA 2513 || |||||||||||||| |||| ||||||| |||| Sbjct 5862 ACTCGTTGGCATATTTGTAAGTAAATGGATGTCACCAA 5825 Score = 93.3 bits (102), Expect = 7e-16 Identities = 235/355 (66%), Gaps = 8/355 (2%) Strand=Plus/Minus Query 1516 TGCGTTTTCTTCTTTGTCGAGGAACGATTTATAGCTGGCGCCCTCGCCAGGATTGCAAAG 1575 |||||| | |||| ||| || ||| |||||| || | | || ||||||||||| Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1576 CACAATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTG 1635 | || || || || ||||||| || || ||||| |||||| | | ||| | || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1636 CCAGTC-CTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTG 1694 ||| || |||||| || || || ||||| || | || ||||| ||| |||| Sbjct 6699 CCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGAT 6647 Query 1695 CGATGTCATCTATCACGTTGTACTGCACATCATTTGAATAGACCTTTGAATTGAAATCGA 1754 | | || ||| || ||||||||| ||||||| || |||| | | ||| Sbjct 6646 CAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCAT 6587 Query 1755 GGTGACCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCACATGGTCTTGCCCGTTC 1814 ||||| | |||||||| || | || |||| | ||||| || || || || |||| Sbjct 6586 AATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTC 6527 Query 1815 GAGAGTCACCCTCGATGATTATACTAATTGGTCTCTCCGGCCGCGCAGCGGCACT 1869 || ||||| || | | |||||| || |||| | |||| | ||| |||||| Sbjct 6526 TAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACT 6472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8324977394760