Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq9745 172 9e-40 >seq9745 Length=7305 Score = 172 bits (190), Expect = 9e-40 Identities = 630/967 (65%), Gaps = 46/967 (5%) Strand=Plus/Minus Query 1544 TAAT-GCTGTGTTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTTCG--CCAGG 1600 |||| |||| ||| | |||| ||| || || ||||||||||| || || | || || Sbjct 6826 TAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAG--TTGGGTCCTGG 6769 Query 1601 ATTGCAAAGCACGATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCA 1660 ||||||||| | ||||| || || || ||||||| || || ||||| |||||| | | Sbjct 6768 ATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCT 6709 Query 1661 ATTTGATTGCCAGTC-CTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGAT 1719 ||| | ||||| || |||||| ||||| || ||||| || | || |||| || Sbjct 6708 ATTATACTGCCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAA------AT 6656 Query 1720 AGGTGGGCGCGATGTCGTCTATGATGTTGTACT--GCA-CATGGTTTGAATAGACCCGCG 1776 | || | | || || |||| ||||||| ||| ||| ||| || | Sbjct 6655 AACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG---TACGTTTTTG 6599 Query 1777 AGTTGAAATCGAGGTGTCCACTCAGATAATTGTGGACCCCCAATGCACGCGCCCACATCG 1836 | | | ||| || || | | |||||||| || |||| | ||||| || | Sbjct 6598 GGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTG 6539 Query 1837 TCTTCCCCGTTCGTGAATCACCTTCGACGATGATACTAATAGGTCTCTCCGGCCGCGCAG 1896 | ||||| |||| | |||||||| || | ||||| ||||||| | |||| | ||| Sbjct 6538 TTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAG 6479 Query 1897 CGGCACCTCTCCCGAAATAATTATCAGCCCAATCTTGCA---TCTCCTTGGGCACGTTAG 1953 ||||| || | | | | ||| |||| ||||| | ||||| || ||||| Sbjct 6478 AGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCC---GGTACGTTGT 6425 Query 1954 TGAATGAGGAGAGTTGAAACGGAGGAGACC---ATGGCTCC-GGAGCTCTTGTGAAAATC 2009 | |||| | | ||| |||| | || || || ||||| || ||| ||| Sbjct 6424 TAAATGTACTGGATACAAAAGGAGAA-ACATATATTGCAGGTGGAGCC--TG-GAATATC 6369 Query 2010 CTATCTAGATTGCTAGAGAGGTTGTGATATTGGAAG--AGAAACTTCTCCGGCAGTTTCT 2067 |||| | ||| | | | ||| | | || | || ||| | ||| |||| | Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG-GGC-GTTTTT 6311 Query 2068 CTTTTATTATTTGCATGGCTTCTTCCTTTGAAGAAGCATTTAACGCCTCGGAGGCTGCAT 2127 | | ||||| | | |||| || || || || ||||| || || | | ||| Sbjct 6310 CCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT 6251 Query 2128 CATTAACTGTCTGCTGACCTCCTCTAG------CAGATCTTCCGTCGACTTGAAAATGAC 2181 ||||| | | || ||||| ||||| | |||||||||| || | || || | | Sbjct 6250 CATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTC 6191 Query 2182 CCCATTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGGATGATTTTG 2241 |||| || | ||| |||| ||||||||| || ||||| || | ||| ||||| Sbjct 6190 CCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTAC 6131 Query 2242 CACTCTGTATATTGGCATGGGAGACGGAAGAGGTGTTTGGATGTTTGAGGTCGAAGAATC 2301 | | |||||| || | |||| | | || || ||||| || |||||||||| Sbjct 6130 CTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATC 6071 Query 2302 TGCAATTCGTGCACTGGAACTTTCCTTCGAATTGAATGAGAGCATGCAGATGCGGTTCCC 2361 || ||||||||| | |||| ||||||||||| || || | || ||| | ||||||| Sbjct 6070 TGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCC 6011 Query 2362 CATTCTCGTGAAGTTCTCTGCAGATTCTGATATATTTCTTGTTGACTGGTGTGTCTAGGT 2421 || || ||| ||||||||| || |||| ||||||||||| ||||| || | ||||| Sbjct 6010 TGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGT 5951 Query 2422 TTTGAAGCTGTTCAATTGCACTCTCTTTCGCAATTGAGCATCGGGGATATGTGAGGAAAT 2481 |||||| | | || |||||| | || ||||| |||||||||| || ||| Sbjct 5950 TTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAA 5891 Query 2482 AATTTTT 2488 |||||| Sbjct 5890 TATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8312296545720