Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_017001.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq9745 197 2e-47 >seq9745 Length=7305 Score = 197 bits (218), Expect = 2e-47 Identities = 668/1028 (65%), Gaps = 37/1028 (4%) Strand=Plus/Minus Query 1503 AGCTGAGTTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCA 1562 ||||| ||| | |||| ||| || || ||||||||| | || |||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1563 AAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTACCGTATTTGCAGTTTGA 1622 ||| | ||| || || || ||||||| || || ||||| |||||| | | || | Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1623 TTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTTAGATAGTGCGG 1682 ||||| || |||| |||||| || | ||| || | || ||||| ||| |||| Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGG 6649 Query 1683 TGCGACATCATCAATTACGTTATACTGCACATCGTTTGAGTAGACCCTTGAATTGAAATC 1742 | || | |||||| ||||| ||| |||| || ||| ||| | | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1743 GAGGTGACCACTCAAGTAATTGTGGGACCCTAATGTACGAGCCCACATGGTCTTGCCGGT 1802 ||||| | ||||||||||| | ||||||| | |||||| || || || || || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1803 TCTTGAATCACCCTCGATTATTATACTGATAGGCCTCTCCGGCCGCGCAGCGGCATCCCT 1862 ||| | ||||| || | | |||||| ||||| | | |||| | ||| |||| || Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA---CT 6472 Query 1863 TCCGAAATAATCATCTGCCCAAGCTTGCA---TCTCGACAGGCACGTTAGTGAACG-ACG 1918 | | | || || |||| |||| | |||| || ||||| | || | || Sbjct 6471 CACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCC---GGTACGTTGTTAAATGTACT 6415 Query 1919 AGAGGGGAAACGGAGGAACCCAAGGTTC---TGGAGCCTTAGCGAAAATACGCTCTAAAT 1975 || ||| |||| ||| | | | |||||||| ||| || || |||| Sbjct 6414 GGATACAAAA-GGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCATATCCAAAT 6359 Query 1976 TTG-ACCGAATATTATGATGTTGAAGCACGAAATCTTTCGGTTGTTCTTCCTTTAATATA 2034 | | | ||| | |||| | | ||||||| || ||| |||| | | ||| Sbjct 6358 TAGCATTTAATCT-ATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATC 6300 Query 2035 TTGAGTGCTTCCATGACTGATCCTGCATTGAGGACCTTGGCGTACGTGTCGTTGGCAGAT 2094 | | ||| | | || || | ||| ||| | | ||||| || || || ||| Sbjct 6299 TCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGAT 6240 Query 2095 TGCTGACCTCCTCTAG------CTGATCTACCATCGATCTGGAAAACTCCATGATCAATG 2148 || ||||| ||||| | | ||||| ||||| |||||||| |||| |||||| Sbjct 6239 TGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATT 6180 Query 2149 AAGTCTCCGTCTTTCTCCACGTATGCTTTGACATCTGAGCAGCTCTTAGCTGCCTGTATG 2208 ||||||| ||||| | || | || || | |||| | ||| || |||||||| Sbjct 6179 GTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 2209 TTCGGATGGAAATGTGCTGACCTGGTCGGAGATGTGAGGTCGAATAATCTGCTGTTTGTG 2268 || ||||||||||||| ||||||||| ||||| || ||||| |||||| | || ||| Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2269 CAAACGAACTTTCCTTCGAATTGAATAAGGACGTGCAGATGAGGTTGCCCATCTTCATGT 2328 || | |||| ||||||||||| ||||| ||||| ||| |||||| || | |||||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2329 AATTCTCTGGCAACCCGCAAGAACAATTTATTAACTGGTGTTTGTATGGCT--AATAATT 2386 ||||||| || | | | | || || ||||| || | || | | ||||||| Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT 5940 Query 2387 GGGAAAGTGCCTCTTCTTTGGATAAG-GAGTACTGCGGATATGTAACGAAATAATTCTTC 2445 || || || || ||||| | |||| ||| | || |||||||| | ||| ||| || Sbjct 5939 --GAGAGAGCTTCCTCTTTTG-TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTA 5883 Query 2446 GCACTTAAACGAAAACGCTTTGGCGGTGGCATTCTCGTAAATAAGACGGTGTCACCAATT 2505 | | | |||||||| || |||||| | |||| ||| | ||||||||||| Sbjct 5882 GAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATGTCACCAATT 5823 Query 2506 GGGGTCTC 2513 | |||| Sbjct 5822 TGTATCTC 5815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8198168904360