Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_017987.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq9745 553 3e-154 >seq9745 Length=7305 Score = 553 bits (612), Expect = 3e-154 Identities = 703/968 (73%), Gaps = 12/968 (1%) Strand=Plus/Minus Query 1613 GCATTTTTTAAAGCCCAATTTTTGAGTGCGGAGTTCTTTTCCTCATCCAAGTACTCTTTA 1672 |||||| | | |||||| || | || | |||||| || || || | |||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1673 TAGCTGGAATTTGGTCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGA 1732 || || || || |||||||||||||| ||||||||||| || ||||||||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1733 ACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCACCCATGAACTCCTTA 1792 | ||||| ||||| || | || | ||||| || |||| ||| |||||||| |||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1793 AAGTGCTTTAGGTAATGCGGGTCTACGTCATCAATGACGTTATACCACGCCTCATTACTG 1852 || || |||| ||| |||| || |||| |||||||||||| ||||| || ||||| || Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1853 TATATCTTTGGACTCAGATCCAGGTGTCCACATAAATAGTTATGTGGTCCTAATGATCTG 1912 || | ||||| || | ||| || || ||||| || || ||||| ||||||||||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1913 GCCCACATTGTTTTACCTGTGCGACTATCTCCCTCTATCACTATACTGAGAGGTCTCAAA 1972 ||||| |||||||| || || | | || || |||| |||||||| | ||||| | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 1973 GGCCGCGCAGCGGCAGCCACCACGTTCTCCGCCGCCCACTCTTCGAGTTCGTCCGGAACT 2032 |||| | ||| |||| ||| ||||| || | |||| |||| || ||||| || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACG 6429 Query 2033 CGATCAAAAGNNNNNNNNNNNNNNGGCGAAACATAAACCCCCATCGGAGGTGTAAAAATC 2092 | ||| | || |||||||| | | |||| || ||| Sbjct 6428 TTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 2093 CTATCTAAATTAGCGTTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCC 2152 |||| |||||||| ||||| ||||||| ||||| ||||||||| || | ||| Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCC 6309 Query 2153 TTTATTACAT-TAAGAGCCTCCGACTTACTTCCGCTGTTAAGTGCCTGGGCGTAAGCGTC 2211 | |||| | |||| || | | ||| || || || || | |||||| | || Sbjct 6308 CTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATC 6250 Query 2212 GTTGGCTGATTGTTGACCCCCTCTAG------CAGATCTTCCGTCGACCTGAAACTCTCC 2265 || || ||||||||||||||||| | |||||||||| || | ||| || ||||| Sbjct 6249 ATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCC 6190 Query 2266 CCAGTCGAGGGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGC 2325 ||| || | || ||||||| ||| |||||||| ||||| |||| ||||||||||||| | Sbjct 6189 CCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACC 6130 Query 2326 TCCCTGAATGTTTGGATGGAAATGTACTGACCGGGTTGGGGATACCAGATCGAAGAATCT 2385 |||||| |||||||||||||||||| ||||| |||||| || || |||||||||||||| Sbjct 6129 TCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCT 6070 Query 2386 GTTATTTTGGCACTTGTATTTTCCCTCGAACTGAATGAGCACGTGGAGATGAGGGCTCCC 2445 |||||| ||| |||| || || ||||| || || |||||||||||| |||| || Sbjct 6069 GTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCT 6010 Query 2446 ATCTTCGTGAAGCTCTCTGCAGAttttgatgaattttttgtttgttggggttttgaggtt 2505 | ||| ||| |||||||| || |||||| |||| |||||| |||||| || ||||| Sbjct 6009 GTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTT 5950 Query 2506 ttg--TAATTGGGAAAGTGTCTCTTCTTTGGTGAGAGAGCATTGGGGATAAGTAAGAAAG 2563 ||| ||||| || || | || ||||| || |||||||| |||||||| || ||||| Sbjct 5949 TTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAA 5892 Query 2564 AAATTTTT 2571 | |||||| Sbjct 5891 ATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8613466710420