Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018090.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq9745 571 1e-159 >seq9745 Length=7305 Score = 571 bits (632), Expect = 1e-159 Identities = 714/977 (73%), Gaps = 14/977 (1%) Strand=Plus/Minus Query 1594 CGAAGATCGCATTTCTTTGGGCCCAAGTCCTTAGTGCGCTGTTCTTTTCCTCTTCTAGGT 1653 |||||| |||||| | | ||||| | | | | || |||||| || || || || Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1654 ACTCTTTATAACTTGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGGATGCCGCCTT 1713 |||||||||||||||| ||||| ||||||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1714 TAATTTGAACTGGCTTTCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1773 ||| || || ||||||||||| || | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1774 ATTCTTTAAAGTGCTTTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCTT 1833 |||| ||||| || |||| ||| |||| || |||| |||||||||||||||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1834 CGTTATTGTACACTTTCGGACTCAGATCTAAATGGCCACATAAGTAATTATGTGGACCCA 1893 | || |||||| ||| || || | ||| |||| || ||||||||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1894 ACGACCTGGCCCACATTGTCTTCCCCGTCCGACTATCACCTTCAACTACTATACTCACCG 1953 | || || ||||| ||||| ||||| || | | |||||||| || |||||||||| | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1954 GTCTCAAGGGCCGCGCAGCGGCATCAACGACGTTCTCGCATGCCCACTCTTCGAGTTCTT 2013 ||| |||| | ||| |||| || ||||| || |||| |||| || | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2014 CTGGGACTCGATCAAAAGNNNNNNNNNNNNNNGGCGAAATATAAACCTCCATG-GGAGGC 2072 | || || | ||| | || |||| ||| | | || | |||| | Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT-TGCAGGTGGAGCC 6378 Query 2073 TCAAAAATTCTATCTAAATTTGCATTTAAATTATGGAACTGTAATACATAATCTTTTGGG 2132 | || || |||| ||||| |||||||| |||| || |||| ||||||||||||| Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2133 GCTAGCTCCCTAAGTATTT-TAAGAGCTTCCGACTTGCTTCCCGCGTTAAGTGCTGCTGC 2191 | ||||||| ||| | |||| ||| | | || || | || || ||| |||| Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2192 GTAAGCGTCGTTTGCTGTCTGCTGGCCCCCTCTTG------CAGATCTGCCGTCGATCTG 2245 |||| | || || || | || || |||||||||| ||||||| || || ||||| Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2246 GAAGTCTCCCCACTCCAGTGTGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCT 2305 ||| |||||||| || | ||| ||||||| ||| ||||| || ||||| |||| |||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2306 GGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTCGGGGATACCAAGTC 2365 ||||||| ||||||| ||||| ||||||||||||| ||||||||| || || || | || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2366 GAAGAATCGCTGATTCTGGCACTTGTATTTCCCCTCGAACTGGATGAGCACGTGTAGATG 2425 |||||||| | |||| ||| |||| ||||| ||||| ||||| |||||||| ||| | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2426 AGGTTCCCCATTCTCGTGAAGCTCTCTGCAGATCTTGATGAATTTTTTATTTGTTGGGGT 2485 |||||||| || || ||| |||||||| ||||||||| |||| || ||| |||||| Sbjct 6018 AGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGT 5959 Query 2486 TTCTAAGTTTT--TTAATTGGGAAAGTGCTTCTTCTTTGGAGAGGGAGCATTTGGGATAA 2543 | || ||||| ||||| || || ||||| ||||| | || ||||| | |||||| Sbjct 5958 ATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATAT 5901 Query 2544 GTTATAAAATAATTCTT 2560 |||| |||| ||| || Sbjct 5900 GTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8581764587820