Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018457.1 Length=2623 Score E Sequences producing significant alignments: (Bits) Value seq9745 230 4e-57 >seq9745 Length=7305 Score = 230 bits (254), Expect = 4e-57 Identities = 308/423 (73%), Gaps = 18/423 (4%) Strand=Plus/Minus Query 2100 TGTTGACCACCTCTTG------CAGAACGAGCGTCGACCTGGAATTCTCCCCATTCAATG 2153 |||||||| ||||||| |||| | | || | ||||||||||||||| ||||| Sbjct 6239 TGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATT 6180 Query 2154 GTGTCTCCATCCTTGTCGACGTAGGACTTGACGTCGGAGCTCGACTTAGCTCCCTGTATG 2213 || ||||| | ||| |||| || ||||| |||| |||||| || ||| ||||||||||| Sbjct 6179 GTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATG 6120 Query 2214 TTTGGATGGAAATGTGCTGACCTTGTTGGGGAAACCAAGTCGAACAATCTGTTATTTGTG 2273 |||||||||||||||| |||||| ||||| || || | ||||| ||||||||||| ||| Sbjct 6119 TTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTG 6060 Query 2274 CAGCAGAACTTCCCTTCGAATTGAAGCAGGACATGGAGATGAGGCTGCCCATCGTCGTGA 2333 || | |||||||||||||||| | || || |||||| |||| | || | || ||| Sbjct 6059 CATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGA 6000 Query 2334 AGTTCTCTTGCTATCTTGATAAACTTC----TTACTGCTAGGTGTCTGCAACGAGATAAT 2389 |||||| |||||||| | ||| |||||| ||| | | | | | | Sbjct 5999 GCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTG--GGGTATTT---AGGTTTTGAA 5945 Query 2390 TTGTTCA-AGAGCAGCCTCTTTTGATAAG-GAGCACTGGGGATATGTGAGGAAATAGTTT 2447 | || | ||||| ||||||||| |||| ||||| ||||||||||| || ||| ||| Sbjct 5944 TAATTGAGAGAGCTTCCTCTTTTG-TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTT 5886 Query 2448 TTGGCATTTATACGGAAACGCTTTGGTGGTGGCATTCTTGTAAATAAAACGATGTCACCA 2507 || | | || || ||||| | |||||| |||||| |||| |||||||||| Sbjct 5885 TTAGAAGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATGTCACCA 5826 Query 2508 ATT 2510 ||| Sbjct 5825 ATT 5823 Score = 89.7 bits (98), Expect = 8e-15 Identities = 232/354 (66%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 1510 CTGCGTTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCGCCAGGATTGCAAA 1569 ||||||| | |||| ||| || || |||||| || ||| || |||||||||| Sbjct 6820 CTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAA 6761 Query 1570 GTATAATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATT 1629 | | || || | ||| ||||||| || || |||||||||||| | | || | | Sbjct 6760 GGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACT 6701 Query 1630 GCCAGTCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTTAGATATTGCGGTG 1689 |||| || ||| || || || |||||||| |||| ||||| ||| |||| Sbjct 6700 GCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA------ATAACGCGGAT 6647 Query 1690 CGATGTCATCTATTACGTTGTACTGCACATCATTTGAATAGACCCGCGAATTGAAATCGA 1749 | | || ||| || ||||||||| ||||||| || | | | ||| Sbjct 6646 CAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCAT 6587 Query 1750 GGTGACCGGACAAGTAGTTATGGGACCCTAGCGCACGTGCCCACATGGTCTTCCCCGTTC 1809 |||||| | ||||| || || | |||| | | ||||| || || ||||| |||| Sbjct 6586 AATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTC 6527 Query 1810 GAGAGTCACCCTCGATTATTATACTAATAGGTCTTTCCGGCCGCGCAGCGGCAC 1863 || ||||| || | | |||||| ||||||| | |||| | ||| ||||| Sbjct 6526 TAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8207679541140