Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018716.1 Length=2616 Score E Sequences producing significant alignments: (Bits) Value seq9745 190 3e-45 >seq9745 Length=7305 Score = 190 bits (210), Expect = 3e-45 Identities = 269/371 (73%), Gaps = 13/371 (4%) Strand=Plus/Minus Query 2091 TCATTGGCAGATTGTTGACCTCCTCTGG-AG-----GAACGGGGATCGATTTGAAATTCT 2144 ||||| || ||||||||||| ||||| | || || | ||| || || |||||| Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2145 CCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGACATCAGATGCTG-ATTT 2203 || ||||||| ||||||| ||||| | || | ||| || | || |||| |||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA-GCTGGATTT 6133 Query 2204 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAGACGAGGTCGAAGAA 2263 | ||||||| ||||||||||||||||||| |||||||||||| ||||| || |||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2264 TCTTTCATTAGCACATTGGTATTTACCTTCGAACTGGATAAGCACATGGAGATGAGGCTC 2323 ||| | ||| | ||| ||| || |||||||| ||||||||||| |||||| |||| || Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2324 CCCATTTTCGTGTAATTCTCTGGACACACGAATAAACTTGATATTTGTAGGTGTTTTTAA 2383 || ||||| || ||||||| | | || | || | ||| || || |||| Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2384 CTTCTG--TAATTGCAAAAGAGCCCCTTCTTTTGTTAAAGAGCACCTAGGGTATGTGAG- 2440 || || |||||| | ||||| | |||||||| | |||||| || ||||| || Sbjct 5952 GTTTTGAATAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2441 GAAATAGTTTT 2451 ||||| |||| Sbjct 5894 AAAATATTTTT 5884 Score = 127 bits (140), Expect = 3e-26 Identities = 266/397 (67%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 1469 GAGGAAGACGAATTTCGCATTTTTAAGCGTCCACGCCTTCAGACCTGCATTTTCCTCTTT 1528 |||||| |||| |||||| | || | ||| | ||| | | |||| || | |||| Sbjct 6864 GAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTC 6805 Query 1529 CTCGAGGAAATCTTTATAGCTGCACCCCTCTCCTGGATTGCACAGCACGATTGATGGGAT 1588 || || || |||||||| || | |||||||||||| || | ||||| || || Sbjct 6804 GTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCAT 6745 Query 1589 CCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGATTGCCAATCCTTTTGGGC 1648 ||| ||||||| || || |||||||| ||| | | || | |||||||| ||| ||| Sbjct 6744 CCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGC 6685 Query 1649 CCCAATCAACTCTTTCCAGTGCTTTAGCTTTAGGTACTGCGGAGTGACATCATCGATAAC 1708 ||| || || || || | | | |||| || ||||| || | ||| || || Sbjct 6684 CCCCATGAATTCCTTAAAAT------GTTTTAAATAACGCGGATCAACGTTATCAATGAC 6631 Query 1709 GTTATACTCCACATCATTGGAGTAAACCCTAGCATTGAAATCAAGATGACCGCTCAGATA 1768 ||| ||| |||||||| ||| | | | | |||| |||||||| | || Sbjct 6630 GTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTA 6571 Query 1769 ATTATGTGTACCTAAAGCTCTGGCCCACATTGTCTTTCCCGTTCTAGAACCCCCTTCGAC 1828 ||| |||| ||||| | ||| ||||| ||||| || || ||||||| | ||||| || Sbjct 6570 ATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTAC 6511 Query 1829 GATCAAACTAATAGGACGTTCTGGCCGCGCAGCGGCA 1865 | | ||| ||||| || | |||| | ||| |||| Sbjct 6510 AACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA 6474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8185488055320