Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_018717.1 Length=2599 Score E Sequences producing significant alignments: (Bits) Value seq9745 370 2e-99 >seq9745 Length=7305 Score = 370 bits (410), Expect = 2e-99 Identities = 675/984 (69%), Gaps = 22/984 (2%) Strand=Plus/Minus Query 1458 GAAGACCGCATTCTTTAGAGTCCAGTTTCTAAGAGACGCATTATCTTCTTTCTCGAGGAA 1517 |||||| ||||| | |||| |||| ||| || || || | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1518 AGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTT 1577 ||||||| || || || |||||||| || | ||||| || || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1578 AATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAAGGAG 1637 || || || ||||||||||| | | ||| | ||||| || ||| |||||| | || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1638 TTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATACTC 1697 ||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6675 TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCA 6622 Query 1698 CACTGCATTTGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGG 1757 | |||| || | | | | |||| |||||||| |||||||| ||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGG 6562 Query 1758 GCCTAAGACCCTAGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCGACTATGAGACT 1817 |||||| |||||||| || || ||||| ||||| | |||||||| || | | ||| Sbjct 6561 GCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACT 6502 Query 1818 CAATGGTCTTTCTGGCCGCGCAGCGGGACTTCTTCCAAAATAATCATCTGCCCACTCTTG 1877 || |||| | |||| | ||| || ||| ||| | || || |||| ||||| Sbjct 6501 CATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTG 6445 Query 1878 CATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAG--TCCATGGCTCC 1935 | || || ||||| | || | | | ||| |||| | | || || Sbjct 6444 AAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGG 6385 Query 1936 -GGAGCCTTTTGGAATATTCTGCTTGCGTTAGCAAGCAGGTTGTGATGTTGAAGGAAGAA 1994 ||||||| ||||||| | |||||| | | ||| | | | | Sbjct 6384 TGGAGCCT---GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATA 6328 Query 1995 ATGTTGTGGTTGTTCTTCCTTTATTATTTGCAGAGCTGCCTCTGCCGATTCTGCATTTAA 2054 || || ||| ||| |||| | ||||| | | ||||| | || | | ||||| Sbjct 6327 ATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAG 6268 Query 2055 CGCCTTGGCATATGTATCGTTAACTGACTGCTGACCTCCTCGAG------CAGATCTGCC 2108 || | || || ||| ||| | || || ||||| |||| | ||||||| || Sbjct 6267 GGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCC 6208 Query 2109 GTCGATCTGGAATTTTCCCCATTCAATTGTATCTCCATCTTTGTCGATGTAGGACTTGAC 2168 || |||||||||| |||||| |||||||||||||| | || ||||| || ||||| || Sbjct 6207 ATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCAC 6148 Query 2169 GTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTGGATGGGGA 2228 || ||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| || Sbjct 6147 GTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGA 6088 Query 2229 GACCAGATCGAAGAATCTATTATTCGTGCACTGGTATTTTCCTTCGAATTGGATGAGCAT 2288 ||| |||||||||||||| ||||||||||| ||| || |||||||||||||| |||| Sbjct 6087 GACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCAC 6028 Query 2289 GTGGATATGAGGATCCCCATTTTCGTGAAGTTCTCTGCAGATTTTTATGAACTTCTTGTT 2348 ||||| | |||| |||| ||||| ||| ||||||||| || || ||| | |||||||| Sbjct 6027 GTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTT 5968 Query 2349 AACTGGGGTTTTGATAGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTGAGAGAGCACTG 2408 |||||||| || | |||||| || || ||||||||||| || |||||||| || Sbjct 5967 TACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTG 5908 Query 2409 GGGATAAGTGAG-GAAATAGTTTT 2431 |||||| || || ||||| |||| Sbjct 5907 GGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8131594446900