Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019034.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq9745 412 6e-112 >seq9745 Length=7305 Score = 412 bits (456), Expect = 6e-112 Identities = 678/975 (70%), Gaps = 16/975 (2%) Strand=Plus/Minus Query 1619 TGCATTTTGAAGTGTCCACCGCTTCAAAGCTGAGTTCTTCTCTTCCTCCAAGAACTCTTT 1678 ||||||| || | ||| ||| | ||||| |||||| ||||| || | |||||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1679 ATAGGACGATGTCGGGCCAGGATTGCAGAGGAAGATTGTCGGGATTCCGCCTTTAATTTG 1738 ||| || | || || |||||||| ||||||||||| || || |||||||||| || Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1739 AATTGGCTTGCCGTATTTCGTGTTGCTTTGCCAATCACGCTGGGCCCCCATGAACTCTTT 1798 || ||||| |||||| | | || |||||||||| | |||||||||||| || || Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1799 GAAATGTTTTAGATAGTGCGGATCCACGTCGTCGATGATGTTGTACCAGGCGTCATTTGA 1858 |||||||||| ||| ||||||| |||| || |||| |||||||||||| ||||| Sbjct 6669 AAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTT 6610 Query 1859 ATAGACCTTGGGACTAATGTCCAAATGACCACATAAGTAATTATGTGGACCCAGGCTTCG 1918 || || || || || || ||||||| ||||||||||| ||||| || | || Sbjct 6609 GTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCT 6550 Query 1919 TGCCCACATTGTTTTGCCCGTACGACTATCGCCCTCGATAACAATACTTTTAGGTCTCCA 1978 ||||| |||||||| || || | | || || || | ||| ||||| |||||| Sbjct 6549 AGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTG 6490 Query 1979 TGGCCGCGCAGCGGCTGCCTTCACATTGTCGGCTACCCACTGCTCAAGTTCGTCCGGAAC 2038 |||| | ||| ||| | || || || | ||||| | | ||| ||||| || Sbjct 6489 AGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTAC 6430 Query 2039 TTGATCAAATGAAGAGGACATAAAAGGAGATCTATAAATCTCTACGGGAGGAG---TGAA 2095 | | ||||| | ||| | ||||||||| ||| || | | || |||| ||| Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATAT---TGCAGGTGGAGCCTGGAA 6373 Query 2096 TATCCTCTCTAAATTGGAATTAAGATTATGAAATTGTAATACATAATCCTTTGGGGCTAA 2155 |||| | || ||||| | ||| | ||||||| |||| |||||| |||||| | Sbjct 6372 TATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTT 6313 Query 2156 TTCTTTAATTAGTCGTAGGGCTTCAGACTTACTGCCTGCGTTCAGCGCCTGTGCGTAAGC 2215 ||| |||||| || |||| | | ||| || | || || || | ||||||| | Sbjct 6312 TTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAAC 6253 Query 2216 ATCGTTTATTGATTGTTTGCCTCCTC------TCGCTGATCGTCTATCGATCTGGAATTG 2269 ||| || ||||||| || |||| | || |||| || ||| |||||||||| Sbjct 6252 ATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTC 6193 Query 2270 GCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATATGCCTTGACATCGGAGCTAGACTT 2329 ||||| || | ||||||| |||||| | ||| | ||| || | |||||| || || Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTT 6133 Query 2330 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAA 2389 | ||||||| ||||| ||||||||||||| |||||||||||| || || | ||||| || Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAA 6073 Query 2390 TCTGCAATTCGTGAGTCGGACTTTGCCCTCGAATTGGACGAGCACATGCAGATGAGGTTC 2449 |||| ||||||| | | || || |||||||||| ||||| || ||| ||||||| Sbjct 6072 TCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTC 6013 Query 2450 CCCATTTTGATGCAGTTCTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGG--AGTGAC 2507 || |||| ||| ||||||||| || | ||| |||| |||| ||| | | | Sbjct 6012 CCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAG 5953 Query 2508 AGATTGGTTAATTGCGAAAGAGTTTCTTCTTTCGATAACGAGCACTGCGGATATGTAAGA 2567 ||| ||||| || |||| ||| ||||| | | ||||| || |||||||| ||| Sbjct 5952 GTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2568 AATAAGTTCTTACAA 2582 || | || ||| || Sbjct 5894 AAAATATTTTTAGAA 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8708573078220