Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019569.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq9745 363 3e-97 >seq9745 Length=7305 Score = 363 bits (402), Expect = 3e-97 Identities = 687/1001 (69%), Gaps = 36/1001 (4%) Strand=Plus/Minus Query 1530 TGCGTTTTCCTCTTTGTCTAGGAAGTCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAG 1589 |||||| | |||| ||| || || |||||||| || | ||| |||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1590 CACGATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTATTTACAGTTTGACTG 1649 | ||||| || | ||| |||| || |||||||||||| | | || |||| Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1650 CCACTT-CTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGTG 1708 ||| | |||||| | || || | ||| || | ||||| || | || |||| Sbjct 6699 CCAATCACTTTTG-GCCCCCATGAATTCCTTAAAATGTTTTAAAT------AACGCGGAT 6647 Query 1709 GTACGTCATCAATGACGTTATACTCCACTTCGTCTGAGTAGACCTTTGAGTTGAAATCCA 1768 |||| |||||||||||| ||| | || | ||| |||| | | | ||| Sbjct 6646 CAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCAT 6587 Query 1769 GGTGTCCACTTAGGTAATTGTGTGGGCCTAAGGCACGAGCCCACATCGTCTTCCCTGTCC 1828 || || | || |||||||||||||||||| | | |||||| || || ||||| || | Sbjct 6586 AATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTC 6527 Query 1829 TTGAATCACCTTCAACGATGATACTAAGTGGTCTCTCAGGCCGCGCAGCGGAACCTCTCC 1888 | | |||||||| || | ||||| | |||| | ||||| | ||| || || || Sbjct 6526 TAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCAC---TCA 6470 Query 1889 CAAAATAATCATCCGCCCACTCTTGCATCTCGTCGGGAACGTTAGTGAATGAGGAGAGTT 1948 ||| | || || |||| ||||| | || || ||||| | |||| | | Sbjct 6469 CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATA 6410 Query 1949 GAAACGGAGGGGCCCATGGCTCCGG---AGCCTTTGCGAATATCCTTTCGAGGTTGGAGC 2005 ||| |||| | || | || ||||| ||||||| | || | || ||| Sbjct 6409 CAAAAGGAGAAACATATATTGCAGGTGGAGCCTG---GAATATCATATCCAAATT--AGC 6355 Query 2006 GGATGT----TATGATTCTGCAGGACAAAATCTTTTGGCTGTTCTTCCTTTAAAACAACC 2061 || | ||||| | | | |||||||||| ||| |||| | | | | Sbjct 6354 --ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCT 6297 Query 2062 ATGGCAGCGTCAACAGAACCTGCATTTAACGCCTTGGCATATGAATCATTAACAGACTGC 2121 | ||| || ||| || | ||||| || | || || ||||||| | || || Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2122 TGGCCTCCTCTAG------CAGATCTGCCGTCGATCTGGAAATCTCCCCATTCGATTGAG 2175 || || ||||| | ||||||| || || |||||||| |||||||| || |||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2176 TCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTAGACTTAGCTCCCTGTATGTTT 2235 ||||||| ||| |||||||| ||||| |||| |||||| || ||| |||||||||||||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2236 GGATGGAAATGTGCTGACCTGGTTGGGGAGACCAGATCGAAGAATCTGTTATTCTTGCAC 2295 ||||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2296 TGGTATTTTCCTTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTCTCATGAAGT 2355 ||| || |||||||| ||||| ||||| |||||| |||| |||| || |||||| | Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCT 5997 Query 2356 TCTCGGCAGACTTTGATGAATTTCTTGTTAACTAGGGTTTCAAGGCTTTG--TAATTGGG 2413 |||| ||| | |||||| |||||||||| ||| |||| | ||| |||| |||||| | Sbjct 5996 TCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAG 5937 Query 2414 AAAGTGCCTCGTCTTTGGTTAGAGAGCACTGGGGATATGTAAGGAAATAGTTCTTGGCAT 2473 | || | || ||||| || |||||||| ||||||||||| || ||| || || | | Sbjct 5936 AGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAG 5879 Query 2474 TAATACGGAAACGTTTAATGGATGGCATTTTTGTAA-TAAA 2513 ||| || ||||| | | | |||||| ||||||| |||| Sbjct 5878 AAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAA 5838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8283764635380