Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_019946.1 Length=2574 Score E Sequences producing significant alignments: (Bits) Value seq9745 150 3e-33 >seq9745 Length=7305 Score = 150 bits (166), Expect = 3e-33 Identities = 282/408 (69%), Gaps = 20/408 (5%) Strand=Plus/Minus Query 2018 AGACCCAGCGTTTAACGCTTTTGCATATGAATCATTGGTTGTCTGTATACCTCCTCT--- 2074 |||||||| |||| |||| ||| || |||||| | | ||| ||| ||||| Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2075 ACTTG---ATCTTCCATCGATCTGGAAAACTCCAAAATCAAGGAATTCTCCGTCTTTCTC 2131 | ||| |||||||||| |||||||| |||| |||||| ||||||| ||||| Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2132 CATGTATGATTTAACGTCTGAGCTGCTCTTAGCTCCCTGAATGTTCGGATGGAAATATGC 2191 || || || || |||| |||||| ||| ||||||| ||||| |||||||||| || Sbjct 6162 GATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGT 6103 Query 2192 TGATCTGCTTGTGGAACTGAGGTCGAAGAGTTTCTGGTT-GTATATTTGGACTTTACCCT 2250 ||| ||| ||| || || ||||||| | | | || || || || || || || | Sbjct 6102 TGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTAC-TTCCCTT 6044 Query 2251 CGAGTTGTATAAGCACATGGAGATGAGGTTCCCCATCTTCGTGGAGTTCCCTTGCGACAC 2310 ||| ||| |||||||| |||||| ||||||||| | ||| | ||| | | ||| | | Sbjct 6043 CGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCAT-GAGCTTCTCTGCAAATC 5985 Query 2311 GAATGAATAATTTATTCGAAGGTAGAGAGATATTCTGGAGTTGAA------AGAGAGCCT 2364 ||| |||| || || | | |||| || ||||| ||||||| | Sbjct 5984 --TTGATGTATTTCTT---GTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTT 5930 Query 2365 CTTCTTTTGTTAAAGAACAGCGAGGATATGTTAAGAATATATTTTTAG 2412 | |||||||| | ||| ||| | |||||||||| || |||||||||| Sbjct 5929 CCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAG 5882 Score = 134 bits (148), Expect = 2e-28 Identities = 261/384 (68%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 1443 GCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTCTTTGTCGAGGAAATCTTTA 1502 |||||| |||||| ||| || | | || || | |||| ||| || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1503 TAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTTAATTTGA 1562 || || | |||||||||||| || | ||||| || || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1563 ACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAATCAACTCTTTC 1622 | ||||| ||||| | | || |||||||||| | | |||||| || || || || Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1623 CAGTGCTTTAACTTTAAGTAGTGCGGTGCGACGTCATCGATGACGTTATATTCCA--CTT 1680 | || ||||| | | |||| | |||| ||| |||||||| || ||| | | Sbjct 6668 AAATGTTTTAAAT------AACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCAT 6617 Query 1681 CGTTCGAGTAAACCCTAGAATTGAAATCTAAATGACCACTCAAGTAATTATGTGGGCCTA 1740 | || ||| | | | | ||| ||||||| | |||||||| |||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1741 AAGAACGAGCCCACATTGTCTTCCCTGTTCTTGAATCACCCTCGACGATGATACTAATAG 1800 | || | |||||| ||||| ||||| ||||| | ||||| || || | ||||| |||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1801 GTCTTTCCGGCCGCGCAGCGGCAC 1824 ||| | |||| | ||| ||||| Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCAC 6473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8052339140400