Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020236.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq9745 345 7e-92 >seq9745 Length=7305 Score = 345 bits (382), Expect = 7e-92 Identities = 527/757 (70%), Gaps = 6/757 (1%) Strand=Plus/Minus Query 1594 CGAAGATCGCATTCTTTAGAGCCCAATTCTTTAGTGCGGTGTTCTTTTCCTCGTCGAGGA 1653 |||||| ||||| | |||||||| ||| | || | |||||| || ||||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1654 ATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTT 1713 | ||||||||||| |||||| || |||||||| ||||||||||| || |||||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1714 TAATTTGAACTGGCTTCCCGTATTTAGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1773 ||| || || ||||| |||||| | | || | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1774 ACTCTTTAAAGTGCTTGAGGAAGTGCGGGTCGACGTCATCAATGACGTTGAACCAAGCAT 1833 | || ||||| || || | | |||| || |||| ||||||||||||| |||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1834 CATTACTGTATACCTTTGGACTCAGATCTAAATGACCACACAGATAGTTGTGTGGGCCTA 1893 |||| |||| ||||| || | ||| ||||||| || | || ||||||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1894 GTGACCTAGCCCACATCGTCTTCCCGGTTCTACTATCTCCCTCAATGACTATACTTTGAG 1953 ||| |||||||| || || ||||| |||||| || || || | |||||||| || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1954 GTCTTAAAGGCCGCGCAGCGGCATTGACGACGTTATGGGCCGCCCATTCATCAAGTTCTT 2013 ||| ||||| | ||| |||| | || ||||| | | |||| || | ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2014 CTGGAACTTGGTCAAAAGNNNNNNNNNNNNNNNNNNAAATATATTCCTCCATTGGAGGAG 2073 | || || | || ||| | ||| |||| | ||||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2074 TAAAAATCCTATCTAAATTAGATTTTAAATTATGATACTGAAAAATATAATCTTTCGGGA 2133 || ||| |||| ||||||| ||||| ||||| | | ||| ||||||||| ||| Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2134 GTTTCTCCCGAATGACAGCCATAGCGGCTTCAACGGAGCCTGTGTTTAGGGCCTCTGCAG 2193 |||| |||| ||| | | | || ||| || || | |||||||| ||||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2194 CAGCATCATTAGCTGTCTGTTGACCTCCTC------GTGCAGATCTTCCATCGATCTGAA 2247 | |||||||||| | |||||||| |||| ||||||||||||||| ||||| | Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2248 AACTACCCCAGTTGATGTAATCACCGTCCTTTTTGATGTAGGACTTGACGTCCGAGCTGG 2307 | ||||| | || ||| |||| ||| | ||| || ||||| |||| ||||||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGG 6137 Query 2308 ACTTAGCTCCCTGGAAGTTTGGGTGGTATTGGGTGGA 2344 | ||| ||||||| | |||||| ||| | || || || Sbjct 6136 ATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8603956073640