Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020253.1 Length=2676 Score E Sequences producing significant alignments: (Bits) Value seq9745 389 7e-105 >seq9745 Length=7305 Score = 389 bits (430), Expect = 7e-105 Identities = 693/993 (70%), Gaps = 49/993 (5%) Strand=Plus/Minus Query 1535 TGCATTGTGGAGTGTCCACGACTTTAATGCTGCATTCTCCTCTTTGTCTAGGTACTCTTT 1594 |||||| ||| | ||| ||||| | ||||| |||| |||| ||| || ||||||| Sbjct 6849 TGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1595 ATAACT-GACTCCCTCCCCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTTAATT 1653 |||||| || | || ||||||||| || | ||||| || ||||| ||||||| | Sbjct 6789 ATAACTTGAGTTGGGTCC--TGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACT 6732 Query 1654 TTGAACTGGCTTTTCCGTACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAACT 1713 | || |||||| ||||| | | ||| ||||||| || ||| || || || || | Sbjct 6731 TAAAAG-GGCTTT-CCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATT 6674 Query 1714 CCTTCCAGTGCTTTAACTTTAGATATTGCGGGTTGACGTCATCAATGACGTTGTATTCCA 1773 |||| | || ||||| ||| |||| | |||| ||||||||||||||| ||| Sbjct 6673 CCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTA--CCA 6622 Query 1774 --CTTCGTTCGAGTAAACCCTAGAATTGAAGTCGAGATGACCACTCAAGTAATTATGTGG 1831 | || || ||| | | | | || |||||| | |||||||| ||||| Sbjct 6621 GGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGG 6562 Query 1832 GCCTAACGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCACCTTCGACTATCAAACT 1891 |||||| | | |||||| || || ||||| |||| | |||||||| || | | ||| Sbjct 6561 GCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACT 6502 Query 1892 CATAGGTCTCAATGGCCGCGCAGCGGAACCCCTTCCAAAATACTCATCCGCCCACTCTTG 1951 |||||||| |||| | ||| || || | ||| | || || |||| ||||| Sbjct 6501 CATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCTTG 6445 Query 1952 CATCTCGTCGGGAACGTTAGTGAAGGA---GGATAGGGGAAACGGAGGAACCCA-----C 2003 | || || ||||| | || | ||||| ||| |||| ||| | | Sbjct 6444 AAGAATCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGAGAAACATATATTGC 6388 Query 2004 GGCTCCGGAGCCTTTGTGAAAATTCTATTTAAATTAGAATTTAAATTGTGAAATTGAAAA 2063 | | ||||||| ||| || ||| ||||||| |||||| | ||||| | ||| Sbjct 6387 AGGT--GGAGCCTG---GAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAA 6333 Query 2064 AGA-AATTTTTCCGGCAATTTCTCCCTAATTATTTGCAGAGCCGTCTGTTT-ATCCGGAG 2121 | ||| ||| ||| ||| ||||||||||| | | || | |||||| | | || Sbjct 6332 TAATAATCTTTTGGGCGTTTT-TCCCTAATTATCTCTAAGGCTG-CTGTTTTAGACCCAG 6275 Query 2122 CATTTAACGCCTCAGCTGCAGCATCATTAGCTGTCTGTTGGCCTCCTCTAGCACTT---- 2177 ||||| || || || | |||||||||| | ||||| || ||||| | | || Sbjct 6274 AATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAG 6215 Query 2178 --CTTCCGTCGACCTGGAACTGTCCCCATTCAATTGTATCTCCGTCTTTGTCGATGTAGG 2235 ||||| || | |||||| | |||||| |||||||||||||||| || ||||| || | Sbjct 6214 ATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACG 6155 Query 2236 ACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTG 2295 |||| |||| ||||||||||||| ||||||| ||||| ||||||||||||| |||||| | Sbjct 6154 ACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGG 6095 Query 2296 TTGGGGATACCAGGTCGAACAATCTATTATTCGTGCACTGGAATTTCCCTTCGAACTGGA 2355 |||| || || || ||||| ||||| ||||||||||| | | ||||||||||| |||| Sbjct 6094 TTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGA 6035 Query 2356 GAAGGACGTGGAGATGAGGCTCCCCATTTTCATGAAGCTCTCTGCATATTTTGATGAATT 2415 ||| ||||||||| |||| |||| ||||||||| |||||||| || |||||| ||| Sbjct 6034 TAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATT 5975 Query 2416 TCTTGTTGACCGGTGTTTGAATGTCAAGAA--ATTGGGAAAGTGTTTCTTCTTTGGTTAA 2473 ||||||| || || || | | || ||| |||| || || ||| ||||| || | Sbjct 5974 TCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGC--TTCCTCTTTTGTAAG 5917 Query 2474 CGAACACCGGGGATATGTTA-TGAAATAGTTTT 2505 || || |||||||||||| ||||| |||| Sbjct 5916 AGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8375700790920