Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020254.1 Length=2664 Score E Sequences producing significant alignments: (Bits) Value seq9745 273 4e-70 >seq9745 Length=7305 Score = 273 bits (302), Expect = 4e-70 Identities = 659/985 (67%), Gaps = 37/985 (4%) Strand=Plus/Minus Query 1523 GCATTGTGGAGTGTCCAGGCTCTCAAT-GATGCATTTTCCTCCTTGTCGAGATACTCTTT 1581 ||||| ||| | ||||| || ||| | ||| || | || | ||| ||| ||||||| Sbjct 6848 GCATTTATGAGAGCCCAGGA-CTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTT 6790 Query 1582 ATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATCTT 1641 |||||| | ||| |||||||| || | ||||| || || || ||||||| | Sbjct 6789 ATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTA 6730 Query 1642 TCTTGGCTTGCCGTACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAATTCCTT 1701 ||||| ||||| | | ||| ||||||| || ||| || || || |||||||| Sbjct 6729 AAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTT 6670 Query 1702 CCAGTGCTTTAGCTTTAGATAATGGGGTGTGACATCATCGATGACGTTATACTCAGCATC 1761 | || |||| |||| | || || | ||| |||||||| ||| ||||| Sbjct 6669 AAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1762 GTCTGAGTA-GACCCGGGAATTGAAATCCAGATGGCCACTTAAGTAATTATGTGGGCCTA 1820 | ||| | || || | ||| ||| || | ||||||||| |||||||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTT-ATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1821 ATGCTCGAGCCCACATCGTCTTGCCCGTTCGAGAGTCACCCTCAACAATTAAACTTATGG 1880 ||| || |||||| || || || || |||| || ||||| || |||| || ||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1881 GCCTCTCTGGTCGCGCAGCGGCACCTCTCCCAAAATAATCATCGGCCCACTCTTGCATCT 1940 | | | || | | ||| ||||| || ||| | || || |||| ||||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAA 6440 Query 1941 CGTCGGGAACGTTAGTGAAGGA---GGAGAGGTGAAACGGAGGAGCCCACGGTTCCGG-- 1995 || || ||||| | || | ||| | ||| |||| | | | | | || Sbjct 6439 TCTCCGGTACGTTGTTAAATGTACTGGATAC---AAAAGGAGAAACATATATTGCAGGTG 6383 Query 1996 -AGCCTTTTGAAAAATCCGAGAAGCATTTGCCATCAAGTTATGATGTTG-AAGGAAGAAG 2053 ||||| | || ||| | ||| || | || ||||| | || || || Sbjct 6382 GAGCCT---GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAA- 6327 Query 2054 TGCTGTGGTTGCTCTTCTTTGATTATTTGCAATGCTTCTTCTGCTGAAGCGGCGTTCAAT 2113 | | ||| | | ||| | ||||| | || ||| || | || | | || | Sbjct 6326 TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGG 6267 Query 2114 GCCTTGGCATATGTGTCGTTAACCGTCTGGCAACCTCCTCTAGCACTT------CTGCCG 2167 || | || || || ||| ||| || ||| ||||| | | || || || Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2168 TCGATTTGGAATTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCGACGTAGGACTTGACG 2227 || || |||||||||||||| || || || ||||||| |||||||| || ||||| ||| Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2228 TCGGACGATGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAG 2287 | ||| |||||| ||||||| | ||| ||||||||||||| |||||||||||| ||| Sbjct 6146 TAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2288 ACCAGATCGAAGAATCTGTTATTTTTGCATTGGAATTTCCCCTCGAACTGGATAAGGACG 2347 || |||||||||||||||||||| ||||| | | ||||| ||||| |||||||| ||| Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2348 TGGAGATGAGGCTGCCCATCTTCGTGAAGTTCTCTTGCGATTTTGATGAACTTCTTATTA 2407 |||||| |||| | || | ||| ||| |||||| || |||||| | ||||| || Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2408 GTTGGGATTGATAGGTTT--AATAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACT 2465 |||| | ||||||| |||||||| || || |||| ||||| ||||||||||| | Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGT 5909 Query 2466 GTGGATAAGTAAGAAAATAATTTTT 2490 | ||||| || |||||| |||||| Sbjct 5908 GGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8337658243800