Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020255.1 Length=2690 Score E Sequences producing significant alignments: (Bits) Value seq9745 288 2e-74 >seq9745 Length=7305 Score = 288 bits (318), Expect = 2e-74 Identities = 652/961 (68%), Gaps = 47/961 (5%) Strand=Plus/Minus Query 1618 TCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTA 1677 ||||||||||||||| | ||||| || ||||| ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1678 TTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTCCAGTGCTTTAGCTT 1737 | | | ||| |||||||||| ||| || ||| |||| ||| || | || |||| | Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAAT- 6656 Query 1738 TAGGTAGTGCGGGGGGACGTCATCGATGACGTTATATGCCACG--TCATTTGAATAAACC 1795 | |||| |||| ||| |||||||| || ||| | ||||| || Sbjct 6655 -----AACGCGGATCAACGTTATCAATGACGTTGTA--CCAGGCATCATTGTTGTACGTT 6603 Query 1796 CTGGAATTAAAATCCAGGTGTCCACTTAAATAGTTATGGGCCCCCAACGCACGAGCCCAC 1855 | | | | ||| || || | ||| || || || | || || | | |||||| Sbjct 6602 TTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCAT 6543 Query 1856 ATCGTCTTCCCCGTTCGACTATCACCCTCGATGATGATACTAACAGGTCTCTCCGGCCGC 1915 || || ||||| |||| | ||||| || | | ||||| | ||||| | |||| | Sbjct 6542 ATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTC 6483 Query 1916 GCAGCGGCACCTCTCCCGAAATAAGCATCAGCCCAATCTTGAATCTCGTCCGGAACGTTA 1975 ||| ||||| || | | | | ||| |||| ||||||| ||||| ||||| Sbjct 6482 CCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTG 6426 Query 1976 GTGAATGA---GGATAGTGGAAAAGGAGGAGTCCATGGCTCAGGAGCTTTTTTGAAAATT 2032 | |||| ||||| |||||||| | || |||| | | ||| || Sbjct 6425 TTAAATGTACTGGATAC---AAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATC 6369 Query 2033 CTATCAAGGTTACTTGATAGGTTGTGATATTGGAAG--AGAAACTTTTCCGGCAGCTTCT 2090 |||| | ||| || | ||| | | || | || ||||| ||| | || | Sbjct 6368 ATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTG-GGC-GTTTTT 6311 Query 2091 CTTTGATGATTCTCATAGCCTCTTCCTTT-GTTCCAGCATTTAACGCCTCAGCTGCAGCG 2149 | | || || ||| || || | ||| | |||| ||||| || || || | | Sbjct 6310 CCCTAATTAT-CTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2150 TCATTAGCTGTCTGTTGACCTCCTCTAGCACTT------CTCCCGTCGATCTGGAACACT 2203 |||||||| | |||||||| ||||| | | || || || || |||||||| || Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2204 CCCCATTCGATGGTGTCACCGTCCTTCTCGACGTATGACTTAACATCGGAGCTGGATTTA 2263 ||||| || || || || |||| |||||||| || ||||| || | ||||||||||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2264 GCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAACAGT 2323 |||||||||||||||||||||||||||||||||||||||| || || || ||||| | | Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2324 CTGTTATTCGTGCAGTTGAACTTCCCTTTTCGATT--GATAAGCACGTGGAGATGAGGGT 2381 |||||||||||||| || ||||||||| ||| | |||||||||||||||| |||| | Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTT--CGAATTGGATAAGCACGTGGAGACGAGGTT 6014 Query 2382 GCCCATCGTCGTGTAGC-TCTCTGCAGATCTTGATGAACTTCTTGTTAACTGGGGTTTGT 2440 || | || || ||| |||||||| ||||||||| | |||||||| |||||||| | | Sbjct 6013 CCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTT 5955 Query 2441 AAGGCTTG--TAACTGGGAAAGTGTGTCTTCTTTGGTTAATGAACATCGTGGATAAGTGA 2498 | | ||| ||| | || || | || ||||| || | || || | ||||| || | Sbjct 5954 AGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTA 5897 Query 2499 TGAAATAATTTTTGGCTTTTAT-AGAAAA--AGAACCCTTCCGTGGCATTTTTGTAAATA 2555 ||| |||||| | || ||||| ||||| || |||||| ||||||| || Sbjct 5896 GAAAAATATTTTTAGAAGAAATGCGAAAACGAGAAC---TCGTTGGCATATTTGTAAGTA 5840 Query 2556 A 2556 | Sbjct 5839 A 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8420083762560