Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020256.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq9745 352 5e-94 >seq9745 Length=7305 Score = 352 bits (390), Expect = 5e-94 Identities = 697/1026 (68%), Gaps = 29/1026 (3%) Strand=Plus/Minus Query 1512 GCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAAATCTTTA 1571 ||||| ||| | ||| | ||| | | ||| || | |||| ||| || || |||||| Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1572 TAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTAATTTGA 1631 || || | ||| |||||||| || | ||||| || || || ||||||| || | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1632 ACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGTTCCTTC 1691 | |||||||||||| | | ||| ||||||| || ||| || || || | |||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1692 CAGTGCTTTAACTTTAGATAATGCGGGGTGACATCATCGATGACGTTGTACTCAGCGTCG 1751 | || ||||| |||| |||| || | ||| |||||||||||| || || Sbjct 6668 AAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCA 6615 Query 1752 TCTGAGTAAATTCTTGGATTGAAGTCCAGGTGTCCACTCAGATAATTATGTGGGCCTAAC 1811 | ||| || |||| | | || || || | | ||||| ||||||||||| Sbjct 6614 TTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAAT 6555 Query 1812 GCACGAGCCCACATTGTCTTCCCCGTTCGAGAGTCACCCTCTACAATTAAACTTATGGGT 1871 | | |||||| ||||| ||||| |||| || ||||| ||||||| || ||| || ||| Sbjct 6554 GATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGT 6495 Query 1872 CTTTCTGGCCGCGCAGCGGCACCTCTCCCAAAATAATCGTCAGCCCACTCCTGCATCTCG 1931 | | |||| | ||| ||||| || ||| | || ||| |||| || || | Sbjct 6494 CGGTGAGGCCTCCCAGAGGCAC---TCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC 6438 Query 1932 TCGGGAACGTTAGTGAAGGAGCAGAGAAGTGACGGAGGAGCCCATGGTTCCGG---AGCC 1988 || || ||||| | || | | | | | |||| | | || | | || |||| Sbjct 6437 TCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 1989 TTGGAAAAAATCCTATCTAGGTTTGAATTAAGATTATGGAACTG-AAATAAGTATTTTTC 2047 | | || ||| |||| | || | ||| | |||| || | |||||| || ||| Sbjct 6377 TGG---AATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTT 6321 Query 2048 AGGGATTTTTTCCTTTATTATTTGAAGAGCAGCTTCTTTTGTAGCTGCGTTTAATGCCTC 2107 ||| ||||||| | ||||| | | || ||| ||| | | | |||| || || Sbjct 6320 -GGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTC 6262 Query 2108 TGCTGCAGCGTCGTTAGACGTTTGGCAACCTCCTCTAGCACTT------CTGCCGTCGAC 2161 ||| | | || |||| || ||| ||| ||||| | | || || || || | Sbjct 6261 TGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCAT 6202 Query 2162 CTGGAATTCTCCCCATTCCATGGTGTCTCCGTCTTTCTCGACGTAGGACTTGACGTCGGA 2221 ||||||||||||||| || || || ||||||| ||||||| || ||||| |||| ||| Sbjct 6201 CTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGA 6142 Query 2222 CGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTGGGGACACCAT 2281 |||||| ||||||| ||||| ||||||||||||| |||||| ||||| || || | Sbjct 6141 GCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAG 6082 Query 2282 GTCGAAGAATCTGTTATTCGTGCATTGGAATTTCCCTTCGAACTGGAGGAGGACGTGGAG 2341 |||||||||||||||||||||||| | | ||||||||||| |||| || |||||||| Sbjct 6081 ATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Query 2342 ATGAGGCTCCCCATCGTCGTGAAGCTCTCTGCAGATTTTGATGAATTTCTTGTTAACTGG 2401 | |||| |||| | || ||| |||||||| || |||||| |||||||||| ||||| Sbjct 6021 ACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGG 5962 Query 2402 TGTTTTTAGGTTGAGGATTTGGGAAAGTGCTTCTTCTTTGGTTAAAGAACACCGTGGAAA 2461 || |||||||| | || || || ||||| ||||| || | ||| || | ||| | Sbjct 5961 GGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2462 TGTGAGGAAATAGTTTTTGGCTTTTATGCAGAA---AGAACCCTTCCGTGGCATTTTTGT 2518 ||| || ||| ||||| | |||| || ||||| || |||||| ||||| Sbjct 5901 TGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAGAAC---TCGTTGGCATATTTGT 5845 Query 2519 AAATAA 2524 || ||| Sbjct 5844 AAGTAA 5839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8290105059900