Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020257.1 Length=2685 Score E Sequences producing significant alignments: (Bits) Value seq9745 116 6e-23 >seq9745 Length=7305 Score = 116 bits (128), Expect = 6e-23 Identities = 301/456 (66%), Gaps = 11/456 (2%) Strand=Plus/Minus Query 1531 GTGAGGAAGATGAATCTCGCATTGCGGAGTGTCCAGGTTCTTAAT-GATGAGTTTTCCTC 1589 |||||||| ||| ||||| ||| | ||||| |||||| | || ||| | || Sbjct 6866 GTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGA-CTTAATAGCTGCGTTCTTATC 6808 Query 1590 TTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACGATTGCTGG 1649 || ||| || || ||||||||||| | ||| | ||||||||| | ||||| || Sbjct 6807 TTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGG 6748 Query 1650 TATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAGTCCCTCTG 1709 || || ||||||| || || ||||| ||||| | | ||| ||||| || || | Sbjct 6747 CATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTT 6688 Query 1710 GGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGGGCGACGTCATCAAT 1769 |||||| || ||||| || | | | |||| ||| |||| | |||| |||||| Sbjct 6687 GGCCCCCATGAATTCCTTAAAAT------GTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1770 GACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTAGGTGTCCGCTCAA 1829 |||||| ||| || || || ||| | | | | ||| || |||| || Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1830 GTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTCTTCCCTGTACGACTATCGCCCTC 1889 ||||||||||| ||||| | | ||||| || || ||||| || | | || || || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1890 GACGATGATACTAATAGGTCGCTCAGGCCGCGCAGCGGAACCTCTCCCGAAATATTCGTC 1949 || | ||||| |||||||| | ||||| | ||| || | ||| | | | ||| || Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG---CACTCACAACGTTTTCTTC 6457 Query 1950 CGCCCATTCTTGCATATCGTCAGGAACGTTATTGAA 1985 |||| ||||| | | || || ||||| || || Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAA 6421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8404232701260