Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_020473.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq9745 558 6e-156 >seq9745 Length=7305 Score = 558 bits (618), Expect = 6e-156 Identities = 716/978 (73%), Gaps = 22/978 (2%) Strand=Plus/Minus Query 1588 CGAAGGTTGCATTTCTTATAGCCCAGTTCTTCAGTGCCGCGTTCTTTTCTTGGTCCAAGT 1647 ||||| ||||||| | | ||||||| ||| | || |||||||| |||| ||| | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1648 ATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTT 1707 | |||||||| ||||| || || ||||||||||| ||||||||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1708 TAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGA 1767 ||| || || ||||||||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1768 ATTCGT------GCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTT 1821 |||| | | |||| ||| ||||||| |||| ||| |||||||||||||| || | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1822 CATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCA 1881 |||| ||||| |||||| |||| || |||| || || | ||||| ||||| || | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1882 AAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCG 1941 | || || ||||| ||||| ||||| || | | ||||| || | |||||||||| | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1942 GTCTCAAGGGCCGCGCAGCGGCATGAACGACGTTATCGCACGCCCACTCTTCGAGTTCAT 2001 ||| |||| | ||| |||| || ||||| || |||| |||| || | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2002 CTGGAACTCGGTCGAAAGAAGAAGGAGA-AAAAGGCGAAATATAGACCTCCATCGGAGGC 2060 | || || || || | | ||| | |||||| |||| ||| | | |||| | Sbjct 6436 CCGGTACGTTGTTAAATGTACT-GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2061 GTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATACATAGTCTTTGGGT 2120 || ||| |||| ||||| |||||||| ||||||| |||| ||| ||||| || Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2121 GCTAGTTCTCTAATGA-CGCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCTGC 2179 | ||| ||||| | | ||||| || ||| ||| || | || || || |||| Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGC 6259 Query 2180 ATAAGCGTCGTTTGCAGTCTGCTGGCCTCCTCTTG------CAGATCTGCCGTCGATTTG 2233 ||| | || || || | || || || ||||||| ||||||| || || || || Sbjct 6258 GTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTG 6199 Query 2234 GAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCT 2293 ||| |||||||| |||| ||| ||||||| ||| |||||||| ||||| |||| |||||| Sbjct 6198 GAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCT 6139 Query 2294 GGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTC 2353 ||||||| ||||||| ||||| ||||||||||||| |||||||||||| || || || || Sbjct 6138 GGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATC 6079 Query 2354 GAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCGAACTGGATGAGCACGTGTAAATG 2413 |||||||| | |||| |||| ||| || || ||||| ||||| |||||||| | | | Sbjct 6078 GAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACG 6019 Query 2414 AGGTTCCCCATTTTCGTGTAGC-TCTCTGCAGATCTTGATGAATTTTTTATTAGTTGGTG 2472 |||||||| ||||| || ||| |||||||| ||||||||| |||| || || ||| | Sbjct 6018 AGGTTCCCTGTTTTCATG-AGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2473 TCTGTAGGTTTTG--TAATTGGGAAAGTGCCTCTTCTTTTGTGAGAGAGCACTTGGGATA 2530 | | ||||||||| ||||| || || || || |||||||| |||||||| | |||||| Sbjct 5959 TATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATA 5902 Query 2531 AGTTAGAAAATAATTCTT 2548 ||||||||| ||| || Sbjct 5901 TGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8588105012340