Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021202.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq9745 576 2e-161 >seq9745 Length=7305 Score = 576 bits (638), Expect = 2e-161 Identities = 717/969 (74%), Gaps = 21/969 (2%) Strand=Plus/Minus Query 1633 TTAA-AGCTGAATTTTTATCCTCATTCAAGTA-CTCTTTATATGATGATGTTGGG-CCTG 1689 |||| ||||| || ||||| || | |||| | ||||||||| ||| |||||| |||| Sbjct 6827 TTAATAGCTGCGTTCTTATCTTCGT-CAAGAAACTCTTTATAACTTGA-GTTGGGTCCTG 6770 Query 1690 GATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTAG 1749 |||||||||||||||| || || || || ||||||| || || || || ||||| | Sbjct 6769 GATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTC 6710 Query 1750 TGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGGG 1809 | || ||||| || |||| ||||||||||||||| ||||| || |||| |||| | | Sbjct 6709 TATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCG 6650 Query 1810 GGTCTACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACCTTTGGGCTTAGAT 1869 | || |||| |||||||||||| ||||| |||||||| |||| |||||||||| || Sbjct 6649 GATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATAT 6590 Query 1870 CAAGATGTCCACACAAATAATTGTGTGGTCCCAGTGATCTGGCCCACATTGTTTTACCTG 1929 || ||| || || || ||||||||||| || | |||||| ||||| |||||||| || | Sbjct 6589 CATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAG 6530 Query 1930 TACGACTATCACCTTCTATCACAATACTTTTGGGTCTCCAAGGCCGCGCAGCGGCAC-CA 1988 | | | |||||||||| || ||||| | |||| ||||| | ||| ||||| || Sbjct 6529 TTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA 6470 Query 1989 CTCACATTTTCAGAAACCCACTCTTCAAGTTCTTCTGGAACTTGATCGAATGAAGAAGAA 2048 | || ||||| |||||| |||| ||| || || || | | |||| | || Sbjct 6469 CA-ACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGAT 6411 Query 2049 AGAAATGGACAAACAAAAACCTCTAAAGGAGGTGCA---AAAATCCTATCTAAGTTAGAG 2105 | ||| ||| ||||| | | | ||| || || || ||| |||| || |||| Sbjct 6410 ACAAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCA 6354 Query 2106 TTTAAATTATGAAATTGTAAAACATAATCTTTAGGAGCTAACTCCTTAATTA-CTCTAAG 2164 ||||| ||||||| ||||| ||||||||| || | ||| |||||| ||||||| Sbjct 6353 TTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG 6294 Query 2165 AGCCTCAGACTTACTGCCGCTGTTAATTGCCTGGGCGTAAGCGTCATTGGCTGTCTGTTG 2224 || | | ||| || || | || | |||||| | ||||| || | ||||| Sbjct 6293 -GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2225 TCCCCCTCTTG------CAGAGCGTCCGTCGATCTGAAATTCTCCCCATTCGAGGGTGTC 2278 |||||||||| |||| | ||| || ||||| ||||||||||| || | || || Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2279 TCCGTCCTTCTCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGG 2338 ||||| |||||| | || ||||| |||| ||||||||||||| ||||||| ||||| || Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGG 6115 Query 2339 ATGGAAATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTTTGGCATTT 2398 ||||||||||| |||||||||||| ||||| || ||||||||||||||||| |||| | Sbjct 6114 ATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGT 6055 Query 2399 GTATTTGCCTTCGAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGTTC 2458 ||| || ||||||||||||||||||||||||||| |||| || | ||||||| ||| Sbjct 6054 GTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTC 5995 Query 2459 GCTGCAGattttgatgtattttttatttgttggggtgtttaggttttttatttgGGAAAG 2518 ||||| || ||||||||||| || ||| |||||| |||||||||| || || || Sbjct 5994 TCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAG 5935 Query 2519 TGCCTCTTCTTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAAAAGTTTTTGGCATATAT 2578 || || ||||| ||||||||||| || ||||| || || |||| ||||| | | | || Sbjct 5934 AGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAAT 5875 Query 2579 TTGAAAACG 2587 ||||||| Sbjct 5874 GCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8575424163300