Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021205.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq9745 444 1e-121 >seq9745 Length=7305 Score = 444 bits (492), Expect = 1e-121 Identities = 676/968 (70%), Gaps = 15/968 (2%) Strand=Plus/Minus Query 1600 CGAAGATTGCATTCTTTATTGCCCACGACTTTAATGCTGTGTTCTTTTCCTCGTCTAGGT 1659 |||||| |||||| | | ||||| ||||| | |||| |||||| || ||||| || Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1660 ACTCTTTATAGCTGGAATTGGGCCCTGGATTGCACAGGAAGATAGCGGGAATGCCACCTT 1719 |||||||||| || || ||||| ||||||||||| |||||||| | ||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1720 TAATTTGAACCGGCTTTCCGTACTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1779 ||| || || ||||||||||| | |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1780 ATTCTTTAAAATGTTTTAGATAGTGCGGATCGACGTCATCAATGACGTTGTACCAGGCAT 1839 |||| ||||||||||||| ||| ||||||| |||| ||||||||||||||||||||||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1840 CATTATTGTATACCTTTGGACTTAAATCAAGATGACCACACAAATAATTATGGGGTCCTA 1899 |||| ||||| ||||| |||| |||| |||||| || || ||||| || || |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1900 ATGACCTGGCCCACATTGTCTTCCCCGTCCGGCTATCTCCTTCGATAACTATACTTATCG 1959 |||| || ||||| ||||| ||||| || | || ||||| | ||||||||| || | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1960 GTCTTAATGGCCGCGCAGA---ACTGACAACGTTCTCTGCAGCCCACTCTTCGAGTTCCT 2016 ||| |||| | |||| ||| |||||||| ||| || |||| |||| || || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2017 CCGGAACTCGATCAAACGAAGAAGAAGAAAAAGGCGAAACATAAACCTCCATCGGAGGTG 2076 |||| || | ||| | | || |||||| |||||||| | | |||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2077 TAAAAATCTTATCTNNNNNNNNNNNNNNNNNNNNNNACTGTAAAACATAATCTTTAGGAG 2136 || ||| |||| | ||||| ||||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2137 CTTTCTCCCTTAGTATACTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCAT 2196 ||| ||||| | ||| | ||| | | ||| ||||| ||||| | || || || | Sbjct 6316 GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGT 6257 Query 2197 ATGCGTCGTTGGCAGATTGGCAACCTCCTC------TAGCCGATCTTCCATCGATCTGGA 2250 | | || || || ||||| ||| |||| | || ||||||||||| ||||||| Sbjct 6256 AAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGA 6197 Query 2251 AAACTCCATGATCAAGCACGTCTCCGTCTTTGTCCATGTAGGACTTGACATCTGTTGAGC 2310 | |||| ||||| ||||||| || || || || ||||| || | |||| Sbjct 6196 ATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAGC 6140 Query 2311 T---TTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATGTGAGAT 2367 | |||| || |||| ||||| ||||||||||||| |||||||||||| || |||| Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2368 CGAAGAATCTTTTGTTTTGGCATTTGTATTTGCCTTCAAATTGGATGAGCACATGCAGGT 2427 |||||||||| || || |||| |||| || ||||| |||||||| ||||| || || Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2428 GAGGAGACCCATCTTCGTGTAACTCTCTGCAGATTCTTATGAATAATTTATTAATAGGTG 2487 |||| || | ||| || |||||||| || | ||| || || || | || | Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2488 TTGCTAGGGCTAAAATTTGGGAAAGTGTTTCTTCTTTGGTCAGGGAGCAGTGTGGATATG 2547 | |||| | ||| || || | ||| ||||| || || |||||||| ||||||| Sbjct 5959 TATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2548 TGAGGAAA 2555 | || ||| Sbjct 5899 TTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8591275224600