Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021245.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq9745 538 6e-150 >seq9745 Length=7305 Score = 538 bits (596), Expect = 6e-150 Identities = 686/944 (73%), Gaps = 18/944 (2%) Strand=Plus/Minus Query 1639 GCTGAATTCTTTTCCTCGTCCAAGTATTCTTTATACGATGATGTTGGTCCTGGATTGCAG 1698 |||| ||||| || ||||| | | |||||||| ||| | |||||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1699 AGGAAGATTGTTGGGATCCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTT 1758 ||||||||||| || ||||| ||||||| || || || || ||||| || | || Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1759 TGCCAGTCCCTCTGTGCCCCCATGAACTCTTTAAAGTGCTTTAGGAAGTGGGGGTCTACG 1818 ||||| || || | ||||||||||| || ||||| || |||| | | || || ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1819 TCATCAATGACGTTGTACCAGGCATCATTACTGTATACTTTTGGACTGAGGTCAAGATGA 1878 | ||||||||||||||||||||||||||| |||| |||||| || | ||| |||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1879 CCACACAAATAATTATGTGGGCCTAACGATCTAGCCCACATTGTCTTCCCTGTACGACTA 1938 || || || ||||| ||||||||||| ||||||||||| ||||| ||||| || | | Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1939 TCACCCTCTACTACAATACTTACAGGCCTCCACGGCCGCGCAGCGGCATCCCTGACATTC 1998 ||||| ||||| || ||||| | ||| | |||| | ||| |||| | || || Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 1999 TCGGAAACCCATTCTTCAAGTTCTTCTGGAACTTGATCAAAAGNNNnnnnnnnnNNNNNN 2058 || |||||| |||| ||| || || || | | ||| | Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2059 NNNACAAAAACCTCCAACGGAGGTGCA---AAAATCCTATCTAAATTGGAATTTAAATTA 2115 ||| | | | || || || || || ||| |||| ||||| | |||||| || Sbjct 6401 GAAACATATAT-TGCA--GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTA 6345 Query 2116 TGAAACTGTAAAACATAATCTTTAGGGGCTAATTCCCTAATTACAT-TAAGAGCCTCTGA 2174 ||||| ||||| ||||||||| ||| | ||||||||||| | |||| || ||| Sbjct 6344 TGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGT 6286 Query 2175 CTTACTTCCGCTGTTAAGCGCTTTGGCGTAAGCATCATTGGCTGATTGTTGCCCTCCTCT 2234 ||| || || || |||| |||||| ||||||| || |||||||| || ||||| Sbjct 6285 TTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCT 6226 Query 2235 AGCACTT------CTTCCATCGATCTGGAACTCTCCCCATTCCAGTGTGTCTCCGTCCTT 2288 | | || |||||||| |||||||| |||||||| || | ||| ||||||| ||| Sbjct 6225 TGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTT 6166 Query 2289 GTTGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATG 2348 | |||||| ||||| |||| ||||||||||||| ||||||| ||||||||||||||||| Sbjct 6165 CTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Query 2349 TGCTGACCTGGTTTGGGATACCAGGTCGAAGAATCTGTTATTCTTGCACTGGAACTTGCC 2408 || |||||||||| | || || || |||||||||||||||||| |||| | |||| || Sbjct 6105 TGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCC 6046 Query 2409 CTCGAACTGGATGAGCACGTGGAGATGAGGGTTCCCATTTTGGTGAAACTCTCTACAGAT 2468 ||||| ||||| |||||||||||| |||| | || |||| ||| ||||| || || Sbjct 6045 TTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAAT 5986 Query 2469 CTTGATATATTTTTTATTTGTTGGTGTAGTTAGGTTTTG--TAGTTGGGAAAGTGCTTCG 2526 |||||| ||||| || ||| ||| ||| |||||||||| || ||| || || |||| Sbjct 5985 CTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCC 5928 Query 2527 TCTTTAGTAAGAGAGCAATCTGGATAAGTGAGGAAAAAATTTTT 2570 ||||| ||||||||||| | ||||| || || |||| |||||| Sbjct 5927 TCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8584934800080