Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021341.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq9745 574 8e-161 >seq9745 Length=7305 Score = 574 bits (636), Expect = 8e-161 Identities = 712/970 (73%), Gaps = 12/970 (1%) Strand=Plus/Minus Query 1611 CTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTACTCTT 1670 ||||||| | |||||||| | || | || | |||||||| ||||| | |||||| Sbjct 6850 CTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTT 6791 Query 1671 TATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTT 1730 |||| ||| | ||||| |||||||| ||||||||||| || || || ||||||| || Sbjct 6790 TATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTT 6731 Query 1731 GAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1790 || || || ||||| || | || ||||| || |||| ||||||||||||||| | Sbjct 6730 AAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCT 6671 Query 1791 TGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCACGCATCATTGC 1850 | || || |||| || | ||||| |||| ||||| ||||||||||| ||||||||| Sbjct 6670 TAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGT 6611 Query 1851 TGTATACTTTAGGGCTTAGATCAAGGTGCCCACATAAATAATTATGTGGACCCAGTGACC 1910 |||| ||| ||||||| |||| || || ||||| ||||| ||||| || | ||| | Sbjct 6610 TGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATC 6551 Query 1911 GTGCCCACATAGTCTTCCCTGTACGACTCTCACCCTCTATGACTATACTTATGGGTCTCC 1970 ||||| || || ||||| || | | |||||| |||| |||||||| || |||| Sbjct 6550 TAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGT 6491 Query 1971 ATGGCCGCGCAGCGGCATCCCTTACATTATCGGCAGCCCAGCATTCAAGTTCTTCTGGAA 2030 |||| | ||| |||| | || || || || ||||| || ||| || || | Sbjct 6490 GAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTA 6431 Query 2031 CTCGATCGAACGAAGACGATAAAAATGGACAAACAAATTCCTCTAGAGGAGGTGCAAAAA 2090 | | || | | |||| ||| ||| ||||| || | | |||| || | Sbjct 6430 CGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATA 6371 Query 2091 TCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACGAAATCTTTGGGGGCTAATT 2150 || |||| |||||||||||||| ||||||| ||||| ||||||| ||| | || Sbjct 6370 TCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTT 6311 Query 2151 CCTTAATTA-CGATAAGAGCCTCTGACTTACTTCCGCTGTTAAGCGCCTTGGCGTAAGCG 2209 || |||||| | |||| || ||| ||| || || || || | |||||| | Sbjct 6310 CCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2210 TCATTGGCTGATTGTTGTCCCCCTCTTG------CAGATCTTGCATCGATCTGAAACTCT 2263 ||||| || |||||||| |||||||||| |||||||| |||| ||||| || ||| Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCT 6192 Query 2264 CCCCATTCGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTGGATTTA 2323 ||||| || || || ||||||| |||||| | ||| ||||| |||| ||||||||||||| Sbjct 6191 CCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTA 6132 Query 2324 GCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAATCGAAGAAT 2383 ||||||||||||| ||||||||||||| |||||||||||| || || | |||||||||| Sbjct 6131 CCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAAT 6072 Query 2384 CTGTTATTTTGGCACTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGAC 2443 |||||||| ||| |||| || ||||||||||||||||||||||||||| |||| | Sbjct 6071 CTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCC 6012 Query 2444 CCATCTTCGTGAAGCTCTCTGCAGAtttttatgtattttttatttgtaggggtttgtagg 2503 | | ||| ||| |||||||| || || |||||||| || ||| ||||| | |||| Sbjct 6011 CTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGG 5952 Query 2504 ttttg--taATTGGGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGATAAGTGAGGA 2561 ||||| |||||| || || |||| ||||||||||| ||||| || ||||| || || | Sbjct 5951 TTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAA 5894 Query 2562 AATAATTTTT 2571 || |||||| Sbjct 5893 AAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8622977347200