Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_021719.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq9745 251 1e-63 >seq9745 Length=7305 Score = 251 bits (278), Expect = 1e-63 Identities = 506/755 (67%), Gaps = 10/755 (1%) Strand=Plus/Minus Query 1701 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1760 |||||||||||| |||||||| ||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1761 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1820 | | | || | ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1821 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTATACTTTTGGACT 1880 | || | |||| |||||||||||| ||||| ||| ||| |||| |||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1881 TAAGTCTAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGTTTT 1940 || || ||||||| || | ||||| ||||| ||||| ||||||||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1941 ACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCCTATCTGGCCGCGCAGCGGC 2000 || ||||| ||||||| || ||||| || || | | |||| | ||| ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2001 ATCCATGACATTTTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGAAGA 2060 | || || ||||| || |||| || | ||| || || || || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA-C 6416 Query 2061 AAGAGA-AAAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTATCTAAATTAT 2119 || | |||||||| ||| |||| |||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2120 TATTAATATTATGGAATTGAAGAACAAAGTCTTTTGGACACAATTCCTTTATTATCTGTA 2179 ||| | |||| || | | | | | |||||||| | |||| | ||||||| || Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2180 ACGCTTCAGATTTACACCCAGTATTTAATGCCTGGGCGTAAGCATCGTTAGCCGTTTGCT 2239 | ||| | | |||| |||||| ||||| || | |||||| |||| ||||||| ||| | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2240 GACCTCCTC------TAGCACTTCTTCCGTCGACCTGGAAGACTCCACTGTCAACAAAAT 2293 |||| |||| | ||| |||||| || | |||||| |||| | |||| || Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2294 CTTGGTCCTTCTCAATGTAGGCCTTGACATCGGAAGAGGACTTTGCTGATTGGAAATTGG 2353 || || |||||| || || | ||| || | ||| ||| || || || | || | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2354 GGTGGTATTGTGTAGAGGAGTTGGGATGAG-TAAGGTCGAAGTGCCTGGGGTTTGTGAAT 2412 | ||| | ||||| || | | ||| ||| ||| |||||| ||| || ||| || Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGA-GAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2413 TGGCACTTACCTTTGAATTGGATGAGAGCATGGAG 2447 | |||| |||| ||||||||| || | ||||| Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8661019894320