Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022005.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq9745 365 7e-98 >seq9745 Length=7305 Score = 365 bits (404), Expect = 7e-98 Identities = 669/975 (69%), Gaps = 19/975 (2%) Strand=Plus/Minus Query 1457 GAAGACCGCATTCTTCAGGGTCCAGTTCCTGATGCCTGTGTTTTCCTCTTTGTTGAGGAA 1516 |||||| ||||| | || | |||| | | || ||| ||| | |||| || || || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1517 ATCTTTATAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTT 1576 ||||||||||| | || ||||||||||| | ||||| || ||||| ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1577 AATGACAACTGGCTTGCCGTACTTGCAATTTGACTGCCATTT-CTTTTGGGCCCAAAAAA 1635 || || ||||| ||||| | | ||| ||||||| | ||||||| ||| | || Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1636 GTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACATCATCAATGACGTTATACT 1695 ||| || | || |||| ||| |||| | || | |||||||||||| ||| Sbjct 6675 -TTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1696 CCACTTCGTCCGAGTACACTCTGGAATTGAAGTCTAGGTGTCCAC-TAAGATAATTATGT 1754 | || | |||| | | | | | || || || | |||| ||||| ||| Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAG-TAATTGTGT 6564 Query 1755 GGGCCTAATGATCGAGCCCACATCGTCTTTCCTGTTCTTGAATCACCTTCGACTATGAGA 1814 ||||||||||||| |||||| || || || || ||||| | |||||||| || | | | Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1815 CTTAATGGTCTTTCTGGCCGCGCAGCGGGACTCTTTCCAAAATAATCATCTGCCCATTCT 1874 || | |||| | |||| | ||| || |||| ||| | || || |||| ||| Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCT 6447 Query 1875 TGCATCTCGTCGGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGAGTCCATGGCTCC 1934 || | || || ||||| | || | | | ||| |||| | || | Sbjct 6446 TGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCA 6387 Query 1935 GGAGGCTTTTGGAATATTCTGGTTGCGTTAGCAACCAGGTTGTGATGTTGAAGGAAGAAA 1994 || || |||||||| | |||||| | | ||| | | | || Sbjct 6386 GGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAA 6327 Query 1995 TGTTGCGGTTGTTCTTCCTTTATTATTTGCAGAGCTGCCTCTGCTGATCCTGCATTTAAC 2054 | || || ||| |||| | ||||| | | ||||| | || || | ||||| Sbjct 6326 TCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGG 6267 Query 2055 GCTTTAGCATATGTGTCGTTAGCAGATTGCTGACCTCCTCTAG------CAGATCTGCCG 2108 |||| || || || ||||| ||||| ||||| ||||| | ||||||| || Sbjct 6266 GCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCA 6207 Query 2109 TCGATCTGGAACTGTCCCCATTCAACTGTATCTCCGTCCTTGTCGATGTAGGACTTGACG 2168 || |||||||| | |||||| |||| ||||||||||| ||| ||||| || ||||| ||| Sbjct 6206 TCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACG 6147 Query 2169 TCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAG 2228 | |||||| |||||| ||||||||||||| ||||||||||||| |||||||||||| ||| Sbjct 6146 TAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAG 6087 Query 2229 ACCAGATCGAAGAATCTGTTATTCGTGCACTGGTATTTTCCTTCGAACTGGATGAGCACA 2288 || |||||||||||||||||||||||||| ||| || |||||||| ||||| ||||| Sbjct 6086 ACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACG 6027 Query 2289 TGTAGATGAGGTTGCCCATCTTCGTGAAATTCTCTGCAGATCTTGATGAATTTCTTGTTA 2348 || ||| |||||| || | ||| ||| ||||||||| ||||||||| |||||||||| Sbjct 6026 TGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTT 5967 Query 2349 ACAGGAGTTGCTAGGTTTTGTATTTGGGAAAGTGCCTCTTCTTTGGTAAGAGAGCACTGG 2408 || || || ||||||||| || || || || || ||||| ||||||||||| ||| Sbjct 5966 ACTGGGGTATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGG 5907 Query 2409 GGATAAGTGAGGAAA 2423 ||||| || || ||| Sbjct 5906 GGATATGTTAGAAAA 5892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8125254022380