Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022073.1 Length=2825 Score E Sequences producing significant alignments: (Bits) Value seq9745 309 5e-81 >seq9745 Length=7305 Score = 309 bits (342), Expect = 5e-81 Identities = 655/962 (68%), Gaps = 18/962 (2%) Strand=Plus/Minus Query 1690 GCATTCTTGATAGCCCAGGCCTTGAGGGATTTGTTTTTCTCCTCGTCGAGGAATTCGGTA 1749 ||||| ||| |||||||| ||| | | | ||| || || ||||| || || || || Sbjct 6848 GCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTA 6789 Query 1750 TAAGAAGAAGTTGGCCCTGGATTGCAGAGGAAGATTGTCGGAATTCCTCCTCTGACCTGA 1809 ||| || | || ||||||||||| ||||||||||| || || || ||| | || | | Sbjct 6788 TAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAA 6729 Query 1810 ATGGGTTTTCCGTATTTGGTGTTGCTTTGCCAATCCCTCTGGGCCCCCATAAACTCCTTG 1869 | ||| ||||||||| | | || |||||||| || | ||||||||| || ||||| Sbjct 6728 AAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTA 6669 Query 1870 AAGTGCTTTAAATAGTGGGGGTCTACGTCATCAATGACGTTGTACCAGGCATCATTACTA 1929 || || |||||||| | || || |||| ||||||||||||||||||||||||||| | Sbjct 6668 AAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTG 6609 Query 1930 AAAACCCTAGGGCTTAAATCCAGGTGTCCACACAAATAATTATGTGGGCCTAATGATCTG 1989 | | ||||||| ||| || || || || ||||| ||||||||||||||||| Sbjct 6608 TACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTA 6549 Query 1990 GCCCACAATGTCTTGCCTGTTCTAGAATCTCCTTCTACTACTATGCTAATCGGTCTCTCA 2049 ||||| | ||| || || ||||||| || |||||||| ||||| || || |||| | | Sbjct 6548 GCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGA 6489 Query 2050 GGCCGCGCAGTGGCAGGCAACACATTCTCAGAGACCCACTCCTCTA-ACTCATCTGGAAC 2108 |||| | ||| |||| || || || || ||||| || | | | || || || || Sbjct 6488 GGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATC-TCCGGTAC 6430 Query 2109 TTGATCAAAAGAAGAAGAAAGAAAGGGGGACTTATAAGGGGGAATTGCAGAAGTAAAAAT 2168 | | ||| | | || | ||| || || ||| | | || || || || Sbjct 6429 GTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATAT 6370 Query 2169 CCTATCAAAATTAGAGTGCAGATTATGATACTGCAGTACATAATC-TTTGGGCATTAATT 2227 | |||| ||||||| | | ||||| | | | |||||| ||||||| || || Sbjct 6369 CATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTT-TTT 6311 Query 2228 CTTTAATAATATTAAGAGCCTCCTG-CTTACTTCCTG-CGTTATTGCTGAGACGTATGCA 2285 | |||| || | | || || ||| ||| || | ||| ||| |||| || Sbjct 6310 CCCTAATTATCTCTA-AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACA 6252 Query 2286 TCGTTTGCAGATTTCTGGCCTCCTC------TTGCAGATCTCATCGTCGACCTGAAACTC 2339 || || || |||| || || |||| |||||||||| | || | ||| || || Sbjct 6251 TCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCT-TCCATCCATCTGGAATTC 6193 Query 2340 ACCCCAGTCGAGGGTGTCTCCGTCCTTTCCGATATATGCCTTGACGTCGGAGGAGGACTT 2399 ||||| || | || ||||||| ||| ||||||| | ||| |||| |||| ||| || Sbjct 6192 TCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTT 6133 Query 2400 AGCGCGTTGAATGTTTGGGTGGAAACTGGCGCTACAGCTTGGGTGAGAC-AGATCGAAGA 2458 | | | || |||||||| |||||| || || | || ||||| |||||||||| Sbjct 6132 ACCTCCCTGTATGTTTGGATGGAAA-TGTGTTGACCTGGTTGGAGAGACAAGATCGAAGA 6074 Query 2459 AACGATCGGAGGTGCAGTTGTATTTTCCCTCGAACTGCAACAGCACATGGAGATGAGGTT 2518 | | | ||||| |||| || || ||||| || | ||||| |||||| |||||| Sbjct 6073 ATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTT 6014 Query 2519 CCCCATTCTCGTGTAGTTCTCTGCAAACCTTAATGTACTTC-AGATTGGTTGGGTATTGA 2577 ||| || || || ||||||||||| ||| ||||| ||| | || | ||||||| Sbjct 6013 CCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATT-T 5955 Query 2578 AGGTTACGGAGTTGTTCTATGGTTTCCTCTTTGGTCAGAGAGCATCTGGGATAGGTGAGG 2637 ||||| | | | | | ||||||||| || |||||||| |||||| || || Sbjct 5954 AGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGA 5895 Query 2638 AA 2639 || Sbjct 5894 AA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8842447858500