Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022229.1 Length=2775 Score E Sequences producing significant alignments: (Bits) Value seq9745 618 8e-174 >seq9745 Length=7305 Score = 618 bits (684), Expect = 8e-174 Identities = 728/978 (74%), Gaps = 14/978 (1%) Strand=Plus/Minus Query 1608 GAAGGTTGCATTCTTCAGAGCCCAATTCTTTAGAGATATAtttttttCTTCGTCTAGATA 1667 |||| |||||| | |||||||| ||| | || | || || |||||||| ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1668 TTCTTTATATGATGATGTTGGG-CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1726 |||||||| ||| |||||| ||||||||||| |||||||| ||||| || ||||||| Sbjct 6795 CTCTTTATAACTTGA-GTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1727 TAATTTGAATGGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTCTGGGCCCCCATGA 1786 ||| || || |||||| ||||| || |||| ||||| || || | ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1787 ATTCTTTAAAATGCTTTAAATAATGCGGGTCTACGTCATCAATGACATTGTACCAGGCGT 1846 |||| |||||||| ||||||||| |||| || |||| ||||||||| ||||||||||| | Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1847 CGTTACTGTACACTTTAGGACTCAGGTCTAGATGTCCACACAAATAATTGTGTGGGCCTA 1906 | || ||||| ||| || || | || ||| || || || |||||||||||||||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1907 GAGACCTGGCCCACATTGTCTTGCCGGTCCTGCTATCACCCTCTATTACAATACTGTTGG 1966 || || ||||| ||||| || || || || ||||| |||| || ||||| | | Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1967 GTCTCCATGGCCGCGCAGCGGCAGACATGACGTTCTCGGACACCCAGACTTCAAGTTCCT 2026 ||| |||| | ||| |||| || ||||| || |||||| ||| ||| || Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2027 CAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATGTAAGGAGCCGGTGGCTCTT 2086 | || || | ||||| | | |||| ||||||||||| || || ||||| | | Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2087 GAAAAATCCTATCTAAATTACTATTTAGATTATGAAATTGCAAAACAAAATCTTTAGGAG 2146 | || ||| |||| |||||| ||||| ||||||| | ||| | ||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2147 CTAATTCTTTAATTACAT-TAAGAGCCTCCGACTTACTTCCAGAGTTAAGCGCCTGGGCG 2205 | ||| |||||| | |||| || | | ||| ||||| || || || | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2206 TAAGCATCATTGGCTGATTGTTGTCCCCCTCTAG------CGGACCTTCCATCGATCTGA 2259 ||| ||||||| || |||||||| |||||||| | | || |||||||| ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2260 AACTCACCCCATTCGATGGTGTCTCCGTCCTTGTCAATATAGGACTTGACGTCAGAGCTG 2319 || || ||||| || || || ||||||| ||| || ||||| ||||| |||| |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2320 GATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGTGGAGACCAGGTCG 2379 |||||| ||||||| ||||||||||||||||||| ||||||||||| ||||| || ||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2380 AAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGCATAAGCACAGGGAGATGT 2439 |||||||||||||| ||||| |||||| |||||||| || |||||||| ||||| | Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2440 GGTTCCCCATTTTCATGAAGCTCTTTGCAGATTTTAATGTATAATTTGTTTACTGGGGTT 2499 ||||||| ||||||||| ||| |||| || || |||||| |||||||||||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2500 TTTAGGTTTTG--TAATTGGGAAAGTGCTTCTGATAGAGAAAGAGAGCAATGTGGATATG 2557 ||||||||||| ||||| || || ||||| | | ||||||||| || ||||||| Sbjct 5957 TTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2558 TGAGGAAATAATTTTTAG 2575 | || ||| |||||||| Sbjct 5899 TTAGAAAAATATTTTTAG 5882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8689551804660