Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022232.1 Length=2834 Score E Sequences producing significant alignments: (Bits) Value seq9745 224 2e-55 >seq9745 Length=7305 Score = 224 bits (248), Expect = 2e-55 Identities = 447/676 (66%), Gaps = 8/676 (1%) Strand=Plus/Minus Query 1756 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1815 |||||||||||| |||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1816 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1875 | | | || | ||||| || | | ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1876 TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTAAACTTTAGGGCT 1935 | || | |||| |||||||||||| ||||| ||| ||| |||| ||| ||||| Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1936 TAGATCTAAATGCCCACACAAATAATTGTGAGGGCCCAAAGACCTGGCCCATACTGTTTT 1995 || ||| |||| || || || |||||||| ||||| || || || ||||||| |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1996 GCCTATTCT-GCTTGGGCCTTCAATAACAATTGATATGGGTCTATCTGGCCGCGCAGCGG 2054 || |||| || | ||||| | ||| || || |||| | |||| | ||| || Sbjct 6534 CCCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGG 6476 Query 2055 AATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCATTGAAAGNNN 2114 | || || ||||| | ||||||| | ||| || || ||| || || | Sbjct 6475 CACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTAC 6416 Query 2115 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTATCTAAATTAC 2174 || |||| |||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2175 TACGCAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCTA 2234 | || ||||| | | ||| | ||||||| ||| |||| ||||||||||| ||| Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2235 ATGCCGCCTCAGCAGAGCCTGCGTTTAAGGCTTCTGCTGCTGCATCATTAGCCGTCTGCT 2294 | || || ||| || | |||| ||||||||| |||||||||||| || | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2295 GACCTCCTC------TAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGTCGATGTAAT 2348 |||| |||| | |||||||| || || | ||||||||| ||||| || || || Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2349 CTCCGTCCTTCTCGATGTATGCCTTGACATCTGAGGAGGATTTAGCTCCCTGGAAATTGG 2408 |||||| ||||||||| || | ||| || | ||| ||||||| ||||||| | || | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2409 GGTGGAACTGGGTGGA 2424 | ||||| || || || Sbjct 6115 GATGGAAATGTGTTGA 6100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8870971883850