Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022586.1 Length=2786 Score E Sequences producing significant alignments: (Bits) Value seq9745 439 4e-120 >seq9745 Length=7305 Score = 439 bits (486), Expect = 4e-120 Identities = 639/898 (71%), Gaps = 16/898 (2%) Strand=Plus/Minus Query 1718 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1777 |||||||||||||||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1778 TTTGTGTTGGATTGCCAGTCCTTCTGGGCCCCAATGAATTCCTTAAAGTGCTTTAGGTAT 1837 || | || | ||||| || | | |||||| |||||||||||||| || |||| || Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAA 6654 Query 1838 TGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTATTACTGTACACTCTTGGATTC 1897 | || || |||| |||||||||||||||||| ||| ||| ||||| | |||| | Sbjct 6653 CGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTT 6594 Query 1898 AGGTCCAAGTGCCCACATAGATAATTATGTGGACCTAAAGACCGAGCCCAAACTGTTTTA 1957 | || | || || |||| ||||| ||||| ||||| || | |||||| | |||||| Sbjct 6593 ATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTC 6534 Query 1958 CCTATCCTACTTGGCCCTTCTATTACAATACTAATGGGCCTATCCGGCCGCGCAGCGGCA 2017 || | ||| ||||||| || ||||| || || | | |||| | ||| |||| Sbjct 6533 CCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCA 6474 Query 2018 TCCTTGATGTTATCAGCAGCCCAATTGCTGATAATATCAGGTACATTATTAAAAGAAGAA 2077 | | ||| || || |||| | | ||| || ||||| || ||||| | | Sbjct 6473 CTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTG 6414 Query 2078 GATAAAAACGGAGAAGTATAAACTTCTACAGGAGGAGAA---AAAATTCTATCTAAATTA 2134 |||| ||| |||||| ||| | | | ||| |||| || || |||| |||||| Sbjct 6413 GATACAAAAGGAGAAACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTA 6357 Query 2135 TTATTAATATTATGGAATTGTAGAACAAAATCTTTTGGGCACAATTCCTTAATAATTTGT 2194 ||| | |||| || ||| | | |||||||||||| |||| |||| || | | Sbjct 6356 GCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCT 6297 Query 2195 AAGGCTTCAGCCTTATTCCCAGCATTTAATGCCTGAGCGTAGGCTTCATTAGCCGTCTGT 2254 |||||| | | ||| ||||| ||||| || | ||||| | |||||||||| ||| Sbjct 6296 AAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGT 6237 Query 2255 TGACCGCCTCTAG------CAGATCTGCCGTCGATCTGGAACTCACCCCAGGTGAGTGTA 2308 ||||| ||||| | ||||||| || || |||||||| || ||||| | |||| Sbjct 6236 TGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTA 6177 Query 2309 TCCCCGTCCTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGGATGTTG 2368 || |||| |||||||| || ||||| |||| ||||||||||||| ||||||| ||||| Sbjct 6176 TCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTT 6117 Query 2369 GGGTGAAAATGGGCTGACCTTGTTGGGGACACGAGGTCGAAGAATCTTTGATTCGTGCAC 2428 || || ||||| | |||||| ||||| || || || ||||||||||| | ||||||||| Sbjct 6116 GGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2429 CTGAATTTCCCCTCGAACTGCACAAGCATGTGGAGGTGAGGTTCCCCATTCTCGTGTAAC 2488 || | ||||| ||||| || | ||||| |||||| ||||||||| || || || Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCT 5997 Query 2489 TCTCTGGCTATATGGATATATTTTTTATTT-GTGGGG-GTTTGGATATTTAATAATTGCT 2546 |||||| || | ||| ||||| || ||| ||||| ||| | | || |||||||| Sbjct 5996 TCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATTG-- 5939 Query 2547 GTAATGCCTCCTCCTTAGAGAGAGAACATCGGGGATAGGTGAGAAAATAGTTTTTAGA 2604 | || ||||| || | ||||| || ||||||| || |||||| |||||||| Sbjct 5938 AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8724424139520