Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_022645.1 Length=2804 Score E Sequences producing significant alignments: (Bits) Value seq9745 343 3e-91 >seq9745 Length=7305 Score = 343 bits (380), Expect = 3e-91 Identities = 702/1037 (68%), Gaps = 12/1037 (1%) Strand=Plus/Minus Query 1625 GAACAATGGCTCGTGGAGGGTGATGAAGGTGGCATTCTTTAAAGCCCAGGCTTTAAGGGA 1684 ||| ||||||| | |||| |||| ||||| | | |||||||| |||| | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1685 TTGGTTCTTTTCCTCTTCCAGAAACTCTTTATATGATGATGTTGGTCCTGGATTGCAGAG 1744 | |||||| || || || |||||||||||||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1745 GAAGATAGTGGGAATGCCGCCTTTAATTTGAATCGGCTTCCCGTACTTTGTATTGCTTTG 1804 |||||| ||||| || |||||||||| || || ||||| ||||| || |||| || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1805 CCAGTCCCTTTGGGCCCCCATAAATTCTTTGAAGTGCTTGAGGTAGTGTGGGTCGACGTC 1864 ||| || |||| ||||||||| ||||| || || || || | || | || || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1865 ATCAATGACGTTGTACCAGGCGTCGTTGCTGTAGACCTTTGGACTAAGATCCAAATGTCC 1924 ||||||||||||||||||||| || ||| |||| ||||| || | ||| |||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1925 ACACAAGTAGTTGTGTGGTCCCAGAGATCGGGCCCACATCGTCTTCCCTGTCCTACTATC 1984 || ||||| |||||||| || | |||| ||||| || || ||||| || ||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1985 GCCTTCTAGAACAATACTGATCGGTCTCCATGGCCGCGCAGCGGGACTGCATATATTTTC 2044 ||||||| ||| ||||| || |||| |||| | ||| || ||| | ||||| Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2045 GGATACCCATATTTCTATTTCGTCTGGGACGTGTGTAAATGAGGATGATAAAAACGGACT 2104 ||||| || | || || |||| |||||| |||| ||| ||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2105 TACATAAGTTTGTGGCGGGAGCTGGAAGATTCTATCTGCGTTAGCAGATATGTTATGGAA 2164 ||||| || || || |||||| || |||| |||||| || |||| || Sbjct 6399 AACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAA 6340 Query 2165 CTGTaaaaaaaaaGACTTCGGATCTTTTTCTTTAATAATTTGAAGAGCTTCTGATTTAGA 2224 ||||| || || || || |||||| |||| || | | ||| ||| |||||| Sbjct 6339 ACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGA 6280 Query 2225 AGAAGCATTCAACGCTTCTGCATATA---CCTGAGCTAAATGCTGGCCCTCAC---CCCT 2278 || ||| | |||||||| || | | | ||| | || || ||| | | | Sbjct 6279 CCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGT 6220 Query 2279 TGCACTTCTGGCATCGACTTGGAAAACTCCATCGTCAAGAAATTCCCCTCCCTTTTCAAT 2338 |||| ||| |||| | ||||| |||| |||| || || ||| || || Sbjct 6219 TGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGAT 6160 Query 2339 GTAAGCTTTGACATCGGACGATGATTTAGCTCCCTCAATGTTCGGATGGAAATGTGTTGA 2398 || | || || | ||| |||||| |||||| ||||| ||||||||||||||||| Sbjct 6159 ATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGA 6100 Query 2399 TCGGGATGGGGAAATGAGATCGAAAAATCTCGGGTTGGTACATTGGAATTTACCTTCGAA 2458 | || ||| || | |||||||| ||||| || || ||| | | || |||||||| Sbjct 6099 CCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAA 6040 Query 2459 TTGAATGAGAACATGGAGATGAGGCACCCCATCCTGATGTAGTTCTCTGCAAACCCTAAT 2518 ||| || || || |||||| |||| ||| | | ||| ||||||||||| | | || Sbjct 6039 TTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGAT 5980 Query 2519 GAATTTGATATTCGTCGGGTAAGAAAGGGCTTG--TAATTGGGAAAGGGCCTCTTCTTTT 2576 | |||| | || ||| | ||| ||| ||||| || || || || |||||| Sbjct 5979 GTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTT 5922 Query 2577 GTTAATGAGCATCGGGGATATGTTATGAAATAATTTTTGGCATTGATTTGAAAACGACCT 2636 || | ||||| |||||||||||| ||| |||||| | | || |||||||| Sbjct 5921 GTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGA-GA 5863 Query 2637 GCTC-TTGGCATATTTG 2652 ||| |||||||||||| Sbjct 5862 ACTCGTTGGCATATTTG 5846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8775891799350