Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023034.1 Length=2760 Score E Sequences producing significant alignments: (Bits) Value seq9745 596 3e-167 >seq9745 Length=7305 Score = 596 bits (660), Expect = 3e-167 Identities = 732/994 (74%), Gaps = 12/994 (1%) Strand=Plus/Minus Query 1615 CGAAGATCGCATTCTTTAAAGCCCAGTTTTTAAGTGCGAAATTCTTTTCTTCATCCAAGA 1674 |||||| ||||| | | ||||||| |||| || ||||| ||||| || | | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1675 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTT 1734 |||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1735 TAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGA 1794 ||| || || ||||| |||||| || |||| | ||||| || |||| ||||||||||| Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1795 ATTCTTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTATACCAGACAT 1854 |||| ||||| || |||| || | ||||| |||| |||||||||||| |||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1855 CATTACTGTAGACCTTTGGGCTAAGGTCTAAATGACCACACAGATAATTATGTGGGCCCA 1914 |||| |||| |||||||| | || ||||||| || | ||||| |||||||| | Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1915 GAGACCTGGCCCACATCGTCTTCCCAGTACGACTATCACCCCTCATGACTATACTTACAG 1974 || || ||||| || || |||||||| | | ||||| | |||||||| | || Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1975 GTCTCAAAGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTT 2034 ||| ||||| | ||| |||||| || ||||| || || |||| |||| ||| | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2035 TTGGAAC-TTGATCAAGGAAGAAAGANNNNNNGGGGGAAACATAACCTTCTTTAGGAAG- 2092 || || ||| | || | | || || |||||||| | | ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTG-GATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2093 TGTAAAATCCCTATCTAAATTAAGATCTAATAATGGAAATTGGAAAACAAAACCTTGGGG 2152 || || ||| |||| |||||| || |||| |||| | ||| | || ||| || Sbjct 6377 TGGAATATCA-TATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGG 6319 Query 2153 TGCTAATTCTTTAATGA-CTCTAAGAGCCTCTGACTTACTCCCTGCGTTAAGCGCTGTGG 2211 | ||| |||| | ||||||| || ||| ||| ||| | || || ||| | Sbjct 6318 GCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2212 CGTAAGCGTCATTGGCTGACTGTTGTCCGCCTCTTG------CAGATCTTCCATCGATCT 2265 ||||| | ||||| || || ||||| || ||||||| ||||||||||||| |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2266 GAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGAGC 2325 | || |||||||| || | || ||||||| |||||| | ||| ||||| |||| |||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2326 TTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCCCTGGTTGGGGAAACCAGGT 2385 | |||||| ||||||| ||||||||||||||||||| || ||||||||| || || || | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGAT 6080 Query 2386 CGAAGAATCTGTTATTTTGGCACTTGTACTTTCCTTCGAACTGGATGAGCACGTGAAGAT 2445 |||||||||||||||| ||| ||||||| |||||||| ||||| |||||||| ||| Sbjct 6079 CGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGAC 6020 Query 2446 GAGGTTCCCCATCTTCGTGGAGTTCTCTGCAGATTTTTATGTATTTTTTGTTTACTGGGG 2505 ||||||||| | ||| || ||||||||| || || |||||||| ||||||||||||| Sbjct 6019 GAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGG 5960 Query 2506 TTTGTAGGTTCTGAAGTTGGGTGAGTGCTTCCTCTTTAGTAAGAGAGCATTGTGGATAAG 2565 | | |||||| |||| | ||| ||||||||||| ||||||||||| || ||||| | Sbjct 5959 TATTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATG 5900 Query 2566 TGAGAAAGAAATTTTTGGCATATATTTGAAAACG 2599 | ||||| | |||||| | | | || ||||||| Sbjct 5899 TTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641998620760