Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023312.1 Length=2761 Score E Sequences producing significant alignments: (Bits) Value seq9745 423 3e-115 >seq9745 Length=7305 Score = 423 bits (468), Expect = 3e-115 Identities = 522/712 (73%), Gaps = 10/712 (1%) Strand=Plus/Minus Query 1658 TTCTTTTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAG 1717 ||||| ||||| || | ||||||||||| || || ||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1718 ATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAG 1777 || | ||| || || ||||||| || || |||||||||||| || |||| | ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1778 TCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGGTCGACGTCATCA 1837 || |||| ||||||||||||||| ||||| ||||||| |||| |||| || |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1838 ATGACGTTATACGAGGCATCATTGCTGTACACTTTAGGGCTAAGGTCTAAGTGACCACAT 1897 |||||||| ||| ||||||||||| ||||| ||| ||||| | || | ||||| ||| Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1898 AGGTAGTTATGTGGACCCAACGACCTAGCCCACATGGTCTTCCCGGTTCGACTATCACCC 1957 | ||| || ||||| || || || |||||||| || || ||||| |||| | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1958 TCAATCACAATACTCATGGGCCTCAAAGGCCGCGCAGCGGCACCCACCACGTTCACAGAA 2017 || | || |||||||| || | ||||| | ||| ||||| ||| ||||| | | Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2018 GCCCATTCCTCAAGTTCATCAGGAACTTGATTAAAAGA--TGAAGACAAAAAGGGAGAAA 2075 |||| || | ||| || || || | ||||| | || | |||||| ||||||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAA--GGAGAAA 6398 Query 2076 CATAAACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATT 2135 |||| | | |||| || ||| |||| |||||| ||||| ||||| | Sbjct 6397 CATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAAC 6338 Query 2136 GAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGATAAAGCCTCTTCAGCCGAAC 2195 | ||| | ||||||||||| |||||||||| ||||| ||| || || || | Sbjct 6337 GTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACC 6278 Query 2196 CTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTC------GAG 2249 | | ||||||||| ||||| |||||||||| | |||||||| |||| | Sbjct 6277 CAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTG 6218 Query 2250 CAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATGT 2309 ||||||||||||| ||||| || | ||||| || || ||| |||| ||||||||| | Sbjct 6217 CAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATAT 6158 Query 2310 AGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTG 2361 | ||||| || | ||||||||| || ||||||| | |||||| ||||| || Sbjct 6157 ACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8645168833020