Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_023849.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq9745 489 3e-135 >seq9745 Length=7305 Score = 489 bits (542), Expect = 3e-135 Identities = 689/965 (71%), Gaps = 8/965 (1%) Strand=Plus/Minus Query 1612 CGAAGAGCGCATTTTTTAATGCCCAATCTTTTAGTGCTGCATTCTTTTCCTCGTTAAGAT 1671 |||||| |||||| | | ||||| || | ||||| ||||| || |||| |||| Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1672 ATTCTTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1731 | |||||||| || | || ||||||||||| |||||||| ||||| || || |||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1732 TAATTTGAATGGGTTTCCCATATTTCGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATAA 1791 ||| || || ||| || || ||| | | || ||||| || || | ||||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1792 ATTCCTTGAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTATACCAAGCAT 1851 ||||||| || || |||| ||| | |||||||||| |||||||||||| ||||| |||| Sbjct 6676 ATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCAT 6617 Query 1852 TATTGCTATATACTCTTGGGCTGAGATCGAGATGCCCACATAAATAATTATGTGGCCCTA 1911 |||| | || | ||||||| | ||| ||| || ||||| ||||| ||||| |||| Sbjct 6616 CATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTA 6557 Query 1912 ATGACCTAGCCCACATTGTTTTACCTGTTCGACTATGCCCTTCAATTACAATTGATTTAG 1971 |||| |||||||| |||||||| || |||| | | ||||| | || || ||| Sbjct 6556 ATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAG 6497 Query 1972 GTCTAATAGGCCGCGCAGCGGGACTCATTACATTTTCGGAAACCCAACACTCAATTTCAT 2031 ||| ||||| | ||| || ||||| || ||||| |||||| | || | Sbjct 6496 GTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCT 6437 Query 2032 CTGGGACTAGATCAAACGACGAAGATAGAAAAGGATTTTTAAAAACCTCGGAACGAGTAG 2091 | || || | ||| | |||| ||||||| | | | | | ||| Sbjct 6436 CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCT 6377 Query 2092 GAAAAATTCTATCTAAATTACTATTTAGATTATGAAACTGTAAAATATAATCTTTGGGCT 2151 | || || |||| |||||| ||||| ||||||| ||||| ||||||||| || Sbjct 6376 GGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGC 6317 Query 2152 CTAATTCCTTAATTACAT-TAAGAGCCTCTGACTTACTGCCAGAGTTAAGCGCCTTGGCG 2210 | |||| |||||| | |||| || ||| ||| ||||| || || || | ||| Sbjct 6316 GTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2211 TAAGCATCATTGGCTGATTGTTTTCCCCCTCGTG------CAGATCGTCCGTCGATCTGA 2264 ||| ||||||| || ||||||| ||||||| || |||||| ||| || ||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2265 AACTCTCCCCATTCGACGGTGTCTCCGTCCTTCTCCATATATGACTTGACATCGGAGCTT 2324 || |||||||| || | || ||||||| |||||| ||||| ||||| || | |||||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTG 6138 Query 2325 GATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGACCTAGTTGGGGAGACCAAATCG 2384 |||||| ||||||| ||||| |||||||||||||||||||| ||||| ||||| | |||| Sbjct 6137 GATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCG 6078 Query 2385 AAGAATCGCTGATTCTTGCACTGGAATTTCCCTTCGAATTGAATGAGAACGTGGAGATGA 2444 ||||||| | |||| |||| | | |||||||||||||| || || ||||||||| || Sbjct 6077 AAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGA 6018 Query 2445 GGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTAATATATTTTTTATTAGTAGGGGTA 2504 || || | ||| ||| ||||||||||| || || ||||| || || |||||| Sbjct 6017 GGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTA 5958 Query 2505 ATTAGGTTTCGTATTTGGGAAAGTGCCTCCTCTTTCGAGAGAGAACACTGAGGATATGTA 2564 |||||||| | || || || || |||||||| | ||||| || || |||||||| Sbjct 5957 TTTAGGTTTTGAATAATTGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTT 5898 Query 2565 AGGAA 2569 || || Sbjct 5897 AGAAA 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8524700767140