Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024009.1 Length=2772 Score E Sequences producing significant alignments: (Bits) Value seq9745 340 3e-90 >seq9745 Length=7305 Score = 340 bits (376), Expect = 3e-90 Identities = 536/768 (70%), Gaps = 6/768 (1%) Strand=Plus/Minus Query 1594 TGGCTCTGTGAGGGTGATGAATTCTGCATTCTTTATAGCCCAAGACCTTAGTGCTGAGTT 1653 ||||| |||||| ||| ||||||| | | |||||| ||| | | |||| ||| Sbjct 6873 TGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTT 6814 Query 1654 CTTTTCCTCGTCTAAGAACTCTTTATAGCTGGAGTTGGGCCCAGGATTGCATAGGAAGAT 1713 ||| || ||||| | ||||||||||| || |||||||| || |||||||| |||||||| Sbjct 6813 CTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGAT 6754 Query 1714 AGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTC 1773 ||||| || || ||||||| || || ||||| ||||| | | || ||||| || Sbjct 6753 TGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATC 6694 Query 1774 CCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGGTCTACGTCATCAAT 1833 |||| |||||||||||| || ||||| || |||| || | || || |||| |||||| Sbjct 6693 ACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAAT 6634 Query 1834 GACGTTGTACCAGGAGGCATTTGAATAGATTTTAGGGCTCAGATCTAAATGGCCACATAA 1893 |||||||||||||| |||| || |||| ||||| | ||| |||| || ||||| Sbjct 6633 GACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAA 6574 Query 1894 GTAATTATGTGGTCCCAAAGACCTGGCCCACATAGTCTGGCCCGTACGACTATCACCCTC 1953 |||||| ||||| || || || || ||||| || || | || || | | ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1954 GATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTTGCAGAGGC 2013 | || ||||| |||||| |||| | ||| || || || || ||| | | Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAAC 6454 Query 2014 CCATTCCTCTATGGGCTCTGGAACTTGATCAAAGGAAGAAGAAAGAAAAGGGGAAACATA 2073 ||| || | | ||| || || | | ||| | | || | |||||| |||||||| Sbjct 6453 CCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATA 6394 Query 2074 AACCTCCATTGGAGGTGCAAAAATCCTATCTAAATTATTTTTTAAATTATGATATTGAAA 2133 | | ||||| || ||| |||| |||||| ||||| ||||| | | || Sbjct 6393 TATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAA 6334 Query 2134 AATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCCAGAGCAGCATCAGCGGACCCTGA 2193 | | ||||||| ||| |||| ||||||||||| | | || || ||||| || Sbjct 6333 ATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGA 6274 Query 2194 ATTCAGAGCTTCTGCAGCAGCATCATTAACTCTCTGTTGACCTCCTC------TAGCAGA 2247 ||| || |||||||| | |||||||| | |||||||| |||| | ||||| Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2248 TCTTCCATCGACCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGA 2307 ||||||||| | ||| || || ||||| || || ||| |||| ||||||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2308 CTTGACATCGGATGAGGACTTAGCTCCCTGGAAATTTGGGTGGAAATG 2355 ||| || | ||| ||| ||| ||||||| | ||||| |||||||| Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8680041167880