Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024012.1 Length=2610 Score E Sequences producing significant alignments: (Bits) Value seq9745 365 7e-98 >seq9745 Length=7305 Score = 365 bits (404), Expect = 7e-98 Identities = 682/992 (69%), Gaps = 36/992 (4%) Strand=Plus/Minus Query 1458 CGAAGATCGCATTCTTGATAGTCCAGTTCCTGAGTGATGAATTTTCCTCTTTGTCTAGGA 1517 |||||| ||||| ||| || |||| | | | | || || | |||| ||| || | Sbjct 6856 CGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAA 6797 Query 1518 AATCTTTATAGCTGGCACCCTCACCAGGATTGCAGAGCACGATTGCTGGGATGCCGCCTT 1577 | |||||||| || | || |||||||| || | ||||| || || ||||||| Sbjct 6796 ACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTT 6737 Query 1578 TAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGtttttttGGGCCCCCAGCA 1637 ||| || || |||||||||||| | | ||| ||||||| | ||| |||||||| | Sbjct 6736 TAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGA 6677 Query 1638 ATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACT 1697 |||| || | || |||| ||| |||| | |||| |||||||||||| ||| Sbjct 6676 ATTCCTTAAAATGTTTTAA------ATAACGCGGATCAACGTTATCAATGACGTTGTACC 6623 Query 1698 CCACGTCGTTTGAGTA-GACCCGGTGATTGAAGTCTAAGTGTCCACTGAGATAGTTATGT 1756 | || || ||| | | | || | ||| || || | | || || ||| Sbjct 6622 AGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAA-TGACCGCATAAGTAATTGTGT 6564 Query 1757 GGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCGTGAATCACCTTCGACTATGACA 1816 |||||||| | | |||||| || || ||||| || | | |||||||| || | | | Sbjct 6563 GGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATA 6504 Query 1817 CTTATAGGTCTCTCCGGCCGCGCAGCGGAACCCCTTCCAAAATAATCATCCGCCCATTCT 1876 || ||||||| | |||| | ||| || || | ||| | || || |||| ||| Sbjct 6503 CTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA---CAACGTTTTCTTCAACCCAGTCT 6447 Query 1877 TGCATCTCGTCCGGAACGTTAGTGAAAGAGGAGAGTGGAAACGGAGGGACCCACGGTTCC 1936 || | ||||| ||||| | || | | | ||| |||| || | | | Sbjct 6446 TGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCA 6387 Query 1937 GG---AGCCTTTGCGAATATTCTTTCGAGATTGGAGCGGATGT----TATGATTCTGCAA 1989 || ||||| |||||| | || | ||| ||| || | ||||| | || Sbjct 6386 GGTGGAGCCTG---GAATATCATATCCAAATT--AGC--ATTTAATCTATGAAAACGTAA 6334 Query 1990 GACGAAATCTTTTGGCTGTTCTTCTTTTAAAATCGCCATGGCAGATTGAACAGAATCTGC 2049 |||||||||| ||| ||| | | ||| | | ||| | | ||| | | Sbjct 6333 ATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGA 6274 Query 2050 ATTTAACGCCTTGGCATATGAATCATTAGCAGATTGGCAGCCTCCCCTAGCACTT----- 2104 ||||| || | || || ||||||||| ||||| || || || | | || Sbjct 6273 ATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGA 6214 Query 2105 -CGTCCGTCGATCTGGAATTCTCCCCATTCCAGTGTATCTCCGTCCTTGTCGATGTAGGA 2163 | ||| || ||||||||||||||||| || | ||||||||||| ||| ||||| || || Sbjct 6213 TCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGA 6154 Query 2164 CTTGACGTCGGAGCTCGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCGTGT 2223 ||| |||| |||||| |||||| ||||||||||||| ||||||||||||| ||||| || Sbjct 6153 CTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGT 6094 Query 2224 TGGGGAGACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTACTTCCCTTCGAACTGTAT 2283 ||| ||||| |||||||||||||||||||||||||| |||||||||||||||| || || Sbjct 6093 TGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGAT 6034 Query 2284 GAGCACATGGAGATGAGGCTGCCCATTCTCATGAAGCTCTCTGCAGATTTTGATGAACTT 2343 ||||| |||||| |||| | || || |||||| |||||||| || |||||| | || Sbjct 6033 AAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTT 5974 Query 2344 TTTGTTTATCGGAGTATTTAGGTTTTG--TAATTGTGAAAGTGCTTCTTCTTTGGTAAGA 2401 ||||||| || |||||||||||||| |||||| || || |||| ||||| |||||| Sbjct 5973 CTTGTTTACTGGGGTATTTAGGTTTTGAATAATTGAGAGAG--CTTCCTCTTTTGTAAGA 5916 Query 2402 GAGCACTGGGGATAAGTGAG-GAAATAGTTTT 2432 ||||| |||||||| || || ||||| |||| Sbjct 5915 GAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8166466781760