Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024116.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq9745 444 1e-121 >seq9745 Length=7305 Score = 444 bits (492), Expect = 1e-121 Identities = 528/716 (74%), Gaps = 6/716 (1%) Strand=Plus/Minus Query 1647 GCAGCATTCTTCTCTTCATCCAAGAACTCTTTATAACTGGAATTGGGTCCTGGATTGCAG 1706 || || ||||| ||||| || | |||||||||||||| || ||||||||||||||||| Sbjct 6821 GCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAA 6762 Query 1707 AGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGAT 1766 |||||||| ||||| || |||||||||| || || ||||||||||| || |||| | Sbjct 6761 AGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATAC 6702 Query 1767 TGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAATGGGGATCTACG 1826 ||||| || |||| ||||||||||||||||||||| || |||| ||| | ||||| ||| Sbjct 6701 TGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACG 6642 Query 1827 TCATCGATGACGTTATACCAGGCATCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGT 1886 | ||| |||||||| |||||||||||||| ||||| |||||||| | || ||| Sbjct 6641 TTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGA 6582 Query 1887 CCACACAAATAATTATGTGGTCCGAGTGATCTTGCCCACATGGTCTTGCCCGTTCTACTA 1946 || || || ||||| ||||| || | |||||| ||||| || || || || |||||| Sbjct 6581 CCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCC 6522 Query 1947 TCACCCTCTATGACAATACTTATGGGCCTCAAAGGCCGCGCAGCGGCACCGAGAACATTC 2006 ||||| |||| || ||||| || || | ||||| | ||| ||||| | ||| || Sbjct 6521 TCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTT 6462 Query 2007 TCGGCAGCCCACTCTTGAAGTTCCTCGGGAACTTGGTCAAAAGAAGAAGATAAAAAAGGA 2066 || || |||| |||||||| ||| || || | || ||| | | |||| ||||||| Sbjct 6461 TCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGA 6402 Query 2067 GAAACATAAACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGA 2126 |||||||| | | |||| || ||| |||| |||||| ||||| ||||| Sbjct 6401 GAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGA 6342 Query 2127 TATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGATAAAGCCTCTTCAGCC 2186 | | ||| | ||||||||||| |||||||||| ||||| ||| || || Sbjct 6341 AAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTA 6282 Query 2187 GAACCTGCATTTAGGGCCTCTGCTGCTGCATCATTAGCTGTCTGTTGACCTCCTC----- 2241 || || | ||||||||| ||||| |||||||||| | |||||||| |||| Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2242 -GAGCAGATCTTCCATCGATCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCG 2300 |||||||||||||| ||||| || | ||||| || || ||| |||| ||||||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2301 ATGTAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTG 2356 || || ||||| || | ||||||||| || ||||||| | |||||| ||||| || Sbjct 6161 ATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8619807134940