Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024117.1 Length=2785 Score E Sequences producing significant alignments: (Bits) Value seq9745 269 5e-69 >seq9745 Length=7305 Score = 269 bits (298), Expect = 5e-69 Identities = 510/755 (68%), Gaps = 10/755 (1%) Strand=Plus/Minus Query 1720 TCCTGGATTGCAGAGGAAGATTGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1779 |||||||||||| |||||||||||||| || || ||||||| || || ||||||||||| Sbjct 6774 TCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTA 6715 Query 1780 TTTACAGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1839 | | | || | ||||| || |||| ||||||||||||||||||||| || |||| || Sbjct 6714 TCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATA 6655 Query 1840 TTGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTATACTTTTGGACT 1899 | || || |||| |||||||||||||||||| ||| ||| |||| |||||| || Sbjct 6654 ACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCT 6595 Query 1900 TAAGTCTAAATGACCACACAGATAATTATGTGGTCCTAAAGATCTAGCCCAGACTGTTTT 1959 || || ||||||| || | ||||| ||||| ||||| ||||||||||| | |||||| Sbjct 6594 TATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTT 6535 Query 1960 ACCTATTCTACTTGGGCCTTCTATTACAATACTAATGGGCCTATCTGGCCGCGTAGCGGC 2019 || ||||| ||||||| || ||||| || || | | |||| | || ||| Sbjct 6534 CCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2020 ATCCATGACATTTTCAGCAGCCCAATCGCTGATAATGTCAGGAACATTATTGAAAGAAGA 2079 | || || ||||| || |||| || | ||| || || || || || || | | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTA-C 6416 Query 2080 AAGAGA-AAAAGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCTATCTAAATTAT 2138 || | |||||||| ||| |||| |||||| Sbjct 6415 TGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAG 6356 Query 2139 TATTAATATTATGGAATTGAAGAACAAAGTCTTTTGGACACAATTCCTTTATTATCTGTA 2198 ||| | |||| || | | | | | |||||||| | |||| | ||||||| || Sbjct 6355 CATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTA 6296 Query 2199 ACGCTTCAGATTTACACCCAGTATTTAATGCCTGGGCGTAAGCATCGTTAGCCGTTTGCT 2258 | ||| | | |||| |||||| ||||| || | |||||| |||| ||||||| ||| | Sbjct 6295 AGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTT 6236 Query 2259 GACCTCCTC------TAGCACTTCTTCCGTCGACCTGGAAGACTCCACTGTCAACAAAAT 2312 |||| |||| | ||| |||||| || | |||||| |||| | |||| || Sbjct 6235 GACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTAT 6176 Query 2313 CTTGGTCCTTCTCAATGTAGGCCTTGACATCGGAAGAGGACTTTGCTGATTGGAAATTGG 2372 || || |||||| || || | ||| || | ||| ||| || || || | || | Sbjct 6175 CTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTG 6116 Query 2373 GGTGGTATTGTGTAGAGGAGTTGGGATGAG-TAAGGTCGAAGTGCCTGGGGTTTGTGAAT 2431 | ||| | ||||| || | | ||| ||| ||| |||||| ||| || ||| || Sbjct 6115 GATGGAAATGTGTTGACCTGGTTGGA-GAGACAAGATCGAAGAATCTGTTATTCGTGCAT 6057 Query 2432 TGGCACTTACCTTTGAATTGGATGAGAGCATGGAG 2466 | |||| |||| ||||||||| || | ||||| Sbjct 6056 GTGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8721253927260