Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024304.1 Length=2602 Score E Sequences producing significant alignments: (Bits) Value seq9745 288 2e-74 >seq9745 Length=7305 Score = 288 bits (318), Expect = 2e-74 Identities = 686/1027 (67%), Gaps = 34/1027 (3%) Strand=Plus/Minus Query 1497 AGATGCATTTTCCTCTTTGTCTAGGAAGACTTTATAACTAGCCCCCTCTCCTGGATTGCA 1556 || ||| || | |||| ||| || || |||||||||| | |||||||||||| Sbjct 6822 AGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCA 6763 Query 1557 CAGCACAATTGATGGGATGCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTGGA 1616 || | |||| || || || ||||||| || || |||||||||||| | | || | Sbjct 6762 AAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATA 6703 Query 1617 TTGCCAGTCCTTTTGGGCCCCAATTAACTCTTTCCAGTGTTTCATCTTTAGATAATGCGG 1676 ||||| || ||| |||||| || || || || | ||||| || |||| |||| Sbjct 6702 CTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTT------TAAATAACGCGG 6649 Query 1677 GCTGACATCATCTATGACATTATATTCAGCTTTATTTGAATAAACTCTGGAATTAAAATC 1736 || | ||| ||||| || || || | ||| || | | | | | ||| Sbjct 6648 ATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATC 6589 Query 1737 AAGATGTCCGCTCAAATAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTCCCCGT 1796 | ||| |||| || ||||| ||||||||||||| || |||||| || || ||||| || Sbjct 6588 ATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGT 6529 Query 1797 TCGACTATCACCTTCAATGATAATACTAATAGGTCTCTCTGGCCGCGCAGCGGAATCCTT 1856 || | |||||||| | | ||||| ||||||| | |||| | ||| || | | Sbjct 6528 TCTAGCCTCACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCA- 6470 Query 1857 TCCAAAATAATCATCAGCCCATTCCTGCATCTCGTCAGGCACGTTAGTGAAAGATGAGAG 1916 ||| | || ||| |||| || || | || || ||||| | || | | Sbjct 6469 --CAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGA 6412 Query 1917 TCGAAAAGGAGATACCCATGGTTCTGGAGGCTTCTCAAATATTTTTTGAACATGTGCTCT 1976 | ||||||||| || || | | || || || ||||| | | | || || | Sbjct 6411 TACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATT 6352 Query 1977 AATTTTATCTAATTGAAGAACATAATCCCGGGGTTGTTCTTCTCTAAGTATTT-TAAG-- 2033 | | ||| || | | | |||||| || ||| ||| |||| ||| | |||| Sbjct 6351 TAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGC 6292 Query 2034 TGCCGTGGTAATGCTATCTGCGTTTAGAACCTTCGCATAAGTATCGTTGGCAGATTGACA 2093 ||| || || | | | ||||| | | || ||| ||| || || ||||| Sbjct 6291 TGCTGTTTTAGACCCA---GAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2094 ACCTCCTCTAG------CTGATCTTCCATCTATTTGGAAAGTTCCAAAATCAACGAAGTC 2147 ||| ||||| | | ||||||||||| || ||||| ||| |||||| || Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2148 TCCGTCTTTCTCCATATAGGTCTTGACGTCTGACGAACTC---TTAGCTCCCTGAATGTT 2204 ||||| ||||| ||||| | ||| |||| | || || ||| ||||||| ||||| Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTT 6118 Query 2205 CGGATGGAAATGTGCTGACCTTGTTGGGGATACCAAGTCGAAGAATCGTTGATTTGTGCA 2264 ||||||||||||| |||||| ||||| || || | |||||||||| | ||| ||||| Sbjct 6117 TGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA 6058 Query 2265 GATGTATTTTCCTTCGAATTGGATAAGCACATGGAGATGAGGCTCCCCATTTTCGTGTAG 2324 |||| || |||||||||||||||||||| |||||| |||| |||| ||||| || || Sbjct 6057 TGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATG-AG 5999 Query 2325 C-TCTCTACAAACCCTAATGAATTTCTTGTTGATATTACAATTTAAGGCTTG--TAATTG 2381 | ||||| |||| | | ||| |||||||||| | ||||| | ||| |||| Sbjct 5998 CTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAAT-- 5941 Query 2382 TGAAAGAGCCTCTTCTTTAGATAGTGAACAATGAGGGTATGTAAGGAAATAATTTTTAGA 2441 ||| ||||| || ||||| | || || || || || ||||| || ||| ||||||||| Sbjct 5940 TGAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGA 5881 Query 2442 CTGAACTCTAAAACGTTTAGGCGGTGGCATATTTGTAAATAAGAGG-TGTCTCCAATTGG 2500 || | |||||| | || |||||||||||||| ||| || |||| |||||| | Sbjct 5880 AGAAATGCGAAAACGAGAACTCGTTGGCATATTTGTAAGTAAATGGATGTCACCAATTTG 5821 Query 2501 GAGCTCT 2507 | |||| Sbjct 5820 TATCTCT 5814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8141105083680