Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024491.1 Length=2778 Score E Sequences producing significant alignments: (Bits) Value seq9745 435 5e-119 >seq9745 Length=7305 Score = 435 bits (482), Expect = 5e-119 Identities = 670/955 (70%), Gaps = 16/955 (2%) Strand=Plus/Minus Query 1679 TTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAG 1738 ||||| ||||| || | ||||||||||| || |||||||||||||||||||| |||||| Sbjct 6815 TTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAG 6756 Query 1739 ATAGTTGGAATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTGTTGCTTTGCCAG 1798 || || || ||||||||||||| || || |||||||||||| | | || ||||| Sbjct 6755 ATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAA 6696 Query 1799 TCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGGGGATCGACGTCATCA 1858 || |||| ||||||||||||||||||||| || |||| || | ||||| |||| |||| Sbjct 6695 TCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCA 6636 Query 1859 ATGACGTTGTACCAGGCATCATTACTGTAGATCTTTGGGCTTAAGTCCAGATGACCACAC 1918 ||||||||||||||||||||||| |||| | |||||||||| || |||||| || Sbjct 6635 ATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCAT 6576 Query 1919 AGATAATTATGTGGACCCAGTGACCTAGCCCACATCGTCTTCCCTGTCCGACTGTCACCC 1978 | ||||| ||||| || | ||| |||||||| || || ||||| || | | ||||| Sbjct 6575 AAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCT 6516 Query 1979 TCAATCACTATACTTATGGGCCTGAAAGGCCGCGCAGCGGCACTGACAACATTCTCGGCA 2038 || | |||||||| || || | | ||||| | ||| |||||| ||||| || || || Sbjct 6515 TCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCA 6456 Query 2039 GCCCATTCCTCAAGTTCTTCAGGAACTTGATCAAATGAAGNNNNNNNNNNNNNNNNNACA 2098 |||| || | ||| || || || | | ||||| | ||| Sbjct 6455 ACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACA 6396 Query 2099 TAAACCTCCATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGT 2158 || | | ||||| || ||| |||| ||||||| |||||| ||||||| || Sbjct 6395 TATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGT 6336 Query 2159 AAAACAAAATCTTTGGGAGCTAACTCCCTTATGA-CATTAAGAGCCTCTGACTTACTGCC 2217 ||| | ||||||| || | ||||| || | | |||| || ||| ||| || Sbjct 6335 AAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAG-GCTGCTGTTTTAGACCC 6277 Query 2218 TGCGTTAAGTGCCTTGGCGTAAGCGTCATTGGCTGACTGTTGCCCTCCTC------TTGC 2271 | || || || | |||||| | ||||| || || ||||| || |||| |||| Sbjct 6276 AGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGC 6217 Query 2272 AGATCGTCCATCGATCTGAAACTCACCCCACTCAGTGGTGTCTCCGTCCTTGTCGATGTA 2331 ||||| |||||| ||||| || || ||||| ||| | || ||||||| ||| ||||| || Sbjct 6216 AGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATA 6157 Query 2332 TTGTTTAACATCTGAGCTGGACTTAGCGCCTTGTATGTTGGGGTGGAAACTGGTGCTACA 2391 || || | |||||||| ||| | || |||||||| || |||||| || | Sbjct 6156 CGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT 6097 Query 2392 GCTTGGGTGTACAATATCGAATGTGCGGTTGTTGGTGATTGTGAGCTTTCCTTCGAATTG 2451 | |||| |||| |||||| | ||| || ||| |||| ||| ||||||||||| Sbjct 6096 GGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTG 6037 Query 2452 TAACAAAGCA--TGCAGATGAGGTTCCCCATTTTGATGGAGTTCTCTGCAAATTTTAATG 2509 | ||||| || ||| ||||||||| |||| ||| |||||||||||| || ||| Sbjct 6036 GA--TAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATG 5979 Query 2510 TATTTAATGTTAGAAGGTAGAGAGAGGTTTTGGAAATGTTGTAGAAGGGTT--TCTTTGG 2567 ||||| |||| || | |||||||| ||| | ||| | || ||||| | Sbjct 5978 TATTTCTTGTTTACTGGGGTATTTAGGTTTTG--AATAATTGAGAGAGCTTCCTCTTTTG 5921 Query 2568 AGAGAGAGCATTTGGGAAAGGTTAAGAAAATGTTTTTAGCTTGAATGCGGAATCG 2622 |||||||| | |||| | |||| ||||| ||||||| |||||| || || Sbjct 5920 TAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8699062441440