Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024687.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq9745 533 3e-148 >seq9745 Length=7305 Score = 533 bits (590), Expect = 3e-148 Identities = 713/978 (73%), Gaps = 24/978 (2%) Strand=Plus/Minus Query 1655 AGCCCAAGACTTCAGTGCTGAGTTCTTTTCCTCATCGAGGAACTCTTTATAGCTGGAATT 1714 |||||| ||||| | |||| |||||| || || || || ||||||||||| || || || Sbjct 6837 AGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTT 6778 Query 1715 GGGCCCAGGATTGCATAGGAAGATCGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCC 1774 ||| || |||||||| |||||||| ||||| || || ||||||| || || ||||| || Sbjct 6777 GGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCC 6718 Query 1775 GTACTTGGTGTTACTTTGCCAGTCCCTCTGGGCCCCCATGATTTCTTTAAAGTGCTTTAG 1834 ||| | | ||| ||||| || || | ||||||||||| ||| ||||| || |||| Sbjct 6717 GTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAA 6658 Query 1835 GTAGTTGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTTGAATAGATCTTAGG 1894 || || || |||| |||||||||||||||||| |||||||| || | || || Sbjct 6657 ATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGG 6598 Query 1895 GCTCAGATCTAAATGGCCACATAGGTAATTATGTGGACCCAGTGACCTAGCCCACATTGT 1954 ||| | ||| |||| || |||| |||||| ||||| || | ||| |||||||| ||||| Sbjct 6597 GCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGT 6538 Query 1955 TTTCCCCGTAC--GCCTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCA 2012 |||||| || | |||| |||| || | || ||||| |||||| |||| | || Sbjct 6537 TTTCCCAGTTCTAGCCT--CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCA 6480 Query 2013 GCGGGACCCATCACATTATCAGAGGCCCATTCCTCTATGGCCTCTGGAACTTGATCGAAG 2072 | || || || || || || |||| || | | ||| || || | | || Sbjct 6479 GAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAAT 6420 Query 2073 GAAGAAGAAAGAAAAGGGGAAACATAAACCTCCATTTGGGG--TGAAAAAATCCCATCTA 2130 | | || | |||||| |||||||| | | || ||| | || || | || ||| | Sbjct 6419 GTACTGGATACAAAAGGAGAAACATATAT-TGCAGGTGGAGCCTGGAATA-TCATATCCA 6362 Query 2131 GATTAGCATTAAGATTAGGAAATTTTAAGACATAATCCCTTGGTGCTAATTCCCTAATGA 2190 ||||||||| | || |||| ||| |||||| |||| | ||||||||| | Sbjct 6361 AATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTA 6302 Query 2191 -CTCTAAGAGGCT-CTGACTTACTGCCTGTGTTAATTGCCTTGGCGTAAGCATGCATTGG 2248 ||||||| ||| ||| ||| || | || | || | |||||| ||| |||| | Sbjct 6301 TCTCTAAG--GCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACAT-CATTAG 6245 Query 2249 CTGACTGTTGTCCCCCTCGTG------CAGATCTTCCATCGATCTGAAACTCTCCCCAAT 2302 | || ||||| ||||||| || ||||||||||||| ||||| || |||||||||| Sbjct 6244 CCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAAT 6185 Query 2303 CGAGGGTGTCTCCGT-CTTCTCCAGATAGGACTTGACGTCCGAGCTTGATTTAGCTCCAT 2361 | | || ||||||| |||||| | ||| ||||| |||| ||||| |||||| |||| | Sbjct 6184 CAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCT 6125 Query 2362 GAATGTTAGGATGGAAATGTGCTGACCTGGTTGGCGATACCAGGTCGAAGAATCGGTTAT 2421 | ||||| ||||||||||||| |||||||||||| || || || |||||||||| ||||| Sbjct 6124 GTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTAT 6065 Query 2422 TTGTGCACTGGTACTTCCCCTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCCTTTT 2481 | ||||| ||||||||| ||||| ||||| |||||||| ||| ||||||||| |||| Sbjct 6064 TCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTT 6005 Query 2482 CGTGAAGCTCTCTGCAGATCCTGATGAtttttttGTTTACTGGGGGGTGTATGTTTT--T 2539 | ||| |||||||| ||| ||||| ||| ||||||||||||| | || ||||| Sbjct 6004 CATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAA 5945 Query 2540 TAATTGATAGAGGGCTTCTTTTTTAGTTAGAGAGCATTGGGGATAAGTGAGGAAGTAATT 2599 |||||| |||| ||||| | ||| || |||||||| |||||||| || || || ||| Sbjct 5944 TAATTG--AGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATT 5887 Query 2600 CTTAGCATTTATGCGGAA 2617 |||| | ||||| || Sbjct 5886 TTTAGAAGAAATGCGAAA 5869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8581764587820