Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024693.1 Length=2831 Score E Sequences producing significant alignments: (Bits) Value seq9745 232 1e-57 >seq9745 Length=7305 Score = 232 bits (256), Expect = 1e-57 Identities = 497/754 (66%), Gaps = 10/754 (1%) Strand=Plus/Minus Query 1755 CCTGGATTGCAAAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTAC 1814 |||||||||||||||||||| ||||| || || ||||||| || || ||||| ||||| Sbjct 6773 CCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTAT 6714 Query 1815 TTTGTGTTGGATTGCCAGTCTCTCTGGGCCCCAATGAATTCTTTAAAGTGCTTTAGGTAT 1874 || | || | ||||| || || | |||||| |||||||| ||||| || |||| || Sbjct 6713 CTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAA 6654 Query 1875 TGGGGGTCGACGTCATCAATGACGTTGTACCAAGCACTGTTGCTGTACACTCTTGGACTC 1934 | || || |||| |||||||||||||||||| ||| ||| ||||| | |||| || Sbjct 6653 CGCGGATCAACGTTATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTT 6594 Query 1935 AGGTCCAAGTGCCCACACAGATAATTATGTGGGCCTAAAGACCGAGCCCAAACTGTTTTA 1994 | || | || || || | ||||| ||||||||||| || | |||||| | |||||| Sbjct 6593 ATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTC 6534 Query 1995 CCTATTCT-GCTTGGCCCTTCAATAACAATACTAATGGGCCTATCCGGCCGCGCAGCGGA 2053 || |||| || | ||||| | ||| ||||| || || | | |||| | ||| || Sbjct 6533 CCAGTTCTAGCCT-CACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGC 6475 Query 2054 ATCCATGACATTTTCAGCGGCCCAGTCGCTGATAATGTCAGGAACGGCGTTGAAAGNNNN 2113 | || || ||||| | ||||||| | ||| || || ||| ||| || | Sbjct 6474 ACTCACAACGTTTTCTTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACT 6415 Query 2114 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTATCTAAATTACT 2173 || |||| |||||| Sbjct 6414 GGATACAAAAGGAGAAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGC 6355 Query 2174 ACGTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATTATTGCTAA 2233 | ||| ||||| | | ||| | ||||||| ||| |||| ||||||||||| |||| Sbjct 6354 ATTTAATCTATGAAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAA 6295 Query 2234 TGCCGCCTCAGCAGATCCTGTGTTTAAGGCTTCTGCTGCTGCATCATTAGCCGTCTGCTG 2293 || || ||| || | |||| ||||||||| |||||||||||| || || Sbjct 6294 GGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTG 6235 Query 2294 ACCTCCTC------TAGCAGATCTGCCGTCGACCTGGAATTCACCCCAGTCGATATAATC 2347 ||| |||| | |||||||| || || | ||||||||| ||||| || || ||| Sbjct 6234 ACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATC 6175 Query 2348 TCCGTCCTTCTCGATGTATGCCTTGACATCAGAAGAGGATTTAGCTCCCTGGAAATTGGG 2407 ||||| ||||||||| || | ||| || | || ||||||| ||||||| | || || Sbjct 6174 TCCGTGCTTCTCGATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGG 6115 Query 2408 GTGGAATTGGGTGGAATTATGAGGGTGCACGAGGTCGAAGTGTCTGGGATTTCTGAACTG 2467 ||||| || || || | || || || |||||| |||| ||| || | || Sbjct 6114 ATGGAAATGTGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCA-TG 6056 Query 2468 GGCTTTACCCTT-GAATTGGATAAGGGCATGGAG 2500 | | ||||| |||||||||||| | ||||| Sbjct 6055 TGTACTTCCCTTCGAATTGGATAAGCACGTGGAG 6022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8861463875400