Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024810.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq9745 291 1e-75 >seq9745 Length=7305 Score = 291 bits (322), Expect = 1e-75 Identities = 574/838 (68%), Gaps = 16/838 (2%) Strand=Plus/Minus Query 1583 GAAGATGGCATTCTTGAGAGCCCAGGATTTTAGTGCGGAATTCTTGTCCTCATCCAAGAA 1642 ||||| ||||| ||||||||||||| || | || | ||||| || || || | || Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1643 TTCTTTATAGCTGCTCGAAGGACCAGGATTGCAGAGGAAGATAGTGGGTATACCTCCTTT 1702 |||||||| || || || |||||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1703 AATCATGACTGGCTTTCCGTATTTTGTGTTGCTTTGCCAGTCACGCTGGGCCCCCATGAA 1762 || | |||||||||||| || | || ||||| |||| | |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1763 TTCTTTAAAGTGTTTCAAGTAGTGCGGGTCGACGTCGTCAATGACGTTGTACCAAGCATC 1822 ||| ||||| ||||| || || |||| || |||| ||||||||||||||||| ||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1823 GTTACTGTAGATCTTGGGGCTCAGGTCCAGATGGCCGCACAAGTAATTGTGCGGTCCTAA 1882 || |||| | || ||||| | || ||| ||||| ||||||||||| || ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1883 AGAACGTGCCCACATCGTCTTCCCCGTCCTACTATCACCCTCTAAAACAATACCTATGGG 1942 || | ||||| || || ||||| || ||| ||||| |||| ||| |||| || || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1943 CCTCACTGGCCGCGCAGCGGAACACACAATATTTTCTGATGCCCAATC--GACGAGTTCT 2000 | |||| | ||| || || ||||| |||||| |||| || || || ||| Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA-ATCT 6437 Query 2001 CTTGGGACGAGGTCGAA-GGATTCCTTTGAAAATGGACAAACATATGTATCGACCGGAGC 2059 | || ||| || || | | | | |||| ||| |||||||| | | ||||| Sbjct 6436 C-CGGTACGTTGTTAAATGTACTGGATACAAAA-GGAGAAACATATATTGCAGGTGGAGC 6379 Query 2060 TGCAAATATCCGGTCTAGATTCGTCTTGTAAT-TGTGGTACTGGAAGATGTAATCCTTCG 2118 |||||| || | ||| | | | |||| | || | | || ||||| || | Sbjct 6378 CTGGAATATCATATCCAAATTAG-CATTTAATCTATGAAAACGTAAATAATAATCTTTTG 6320 Query 2119 GGAGCTTTTCCCGAAGGATATTCATTGCTGCCTCCGTCGACCCAGAATTCAGCGCCTCCG 2178 || | ||||||| || || | | ||||| | ||||||||||| || || || | Sbjct 6319 GGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTG 6260 Query 2179 CTGCCGCATCATTAATTGTCTGCTGACCTCCTC------TAGCAGATCGTCCATCGATCT 2232 | |||||||| | || ||||| |||| | ||||||| |||||| |||| Sbjct 6259 CGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCT 6200 Query 2233 GAAACTCACCCCAGTCGACGTAATCACCGTCCTTCTCGATATATGATTTGACGTCGGAGC 2292 | || || ||||| || | ||| |||| |||||||||||| || || |||| ||||| Sbjct 6199 GGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGTAGGAGC 6140 Query 2293 AGGACTTTGCTCCCTGGACGTTCGGGTGGAACTGGGTGGAGCTATGAGGGTGA-ACAACA 2351 ||| || ||||||| | ||| || ||||| || || || || | || || |||| | Sbjct 6139 TGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCT-GGTTGGAGAGACAAGA 6081 Query 2352 TCGAAGTGTCTGGGGTTTCTGAACTGGGCTTTACCTTTGAACTGGATAAGGGCGTGGA 2409 |||||| |||| || || | | || |||| ||| |||||||| |||||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGA 6023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607126285900