Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_024894.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq9745 450 2e-123 >seq9745 Length=7305 Score = 450 bits (498), Expect = 2e-123 Identities = 702/997 (70%), Gaps = 20/997 (2%) Strand=Plus/Minus Query 1586 GAAGACTGCATTCTTGATTGCCCACTGCTTCAGTGCTGCAtttttttCCTCGTCCAGATA 1645 |||||||||||| ||| ||||| ||| | ||||| || || || ||||| ||| | Sbjct 6855 GAAGACTGCATTTATGAGAGCCCAGGACTTAATAGCTGCGTTCTTATCTTCGTCAAGAAA 6796 Query 1646 TTCTTTATAACTGCTGTTTGGACCTTTATTGCACAGGAAGATAGTGGGAATTCCTCCTTT 1705 ||||||||||| ||| || ||| |||||| |||||||| ||||| || || ||||| Sbjct 6795 CTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCATCCCGCCTTT 6736 Query 1706 AATCATGACCGGCTTTCCGTACTTGGTATTGCTTTGCCAGTCACGCTGGGCCCCCATGAA 1765 || | ||||||||||| | |||| ||||| |||| | |||||||||||| Sbjct 6735 AACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGCCCCCATGAA 6676 Query 1766 TTCTTTAAAGTGCTTTAGATAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCATC 1825 ||| ||||| || |||| ||| | |||||||||| |||||||||||||||||||||||| Sbjct 6675 TTCCTTAAAATGTTTTAAATAACGCGGATCAACGTTATCAATGACGTTGTACCAGGCATC 6616 Query 1826 ATTGCTATACACCTTTGGGCTCAAATCAAGATGTCCACACAAGTAATTGTGGGGTCCTAA 1885 |||| | ||| |||||||| | |||| ||| || || ||||||||||| || ||||| Sbjct 6615 ATTGTTGTACGTTTTTGGGCTTATATCATAATGACCGCATAAGTAATTGTGTGGGCCTAA 6556 Query 1886 ACAACGAGCCCACATTGTTTTGCCCGTTCTACTATCACCCTCTATGACTATTCCTATGGG 1945 | | |||||| |||||||| || |||||| ||||| |||| ||||| | || || Sbjct 6555 TGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTCTACAACTATACTCATAGG 6496 Query 1946 TCTAAAAGGCCGCGCAGCGGCACACACAACATTGACATTGGCCCAATC--GACGAGTTCT 2003 || ||||| | ||| ||||| |||||| || | | |||| || || || ||| Sbjct 6495 TCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTCTTCAACCCAGTCTTGAAGA-ATCT 6437 Query 2004 GGAGGAACTCTGTCGAAGGAAGAAATTGAAAATGGAGAAACATACACCTCAGACGGAGGT 2063 || || ||| || | | | ||| ||||||||||| | ||| |||| Sbjct 6436 -CCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGAAACATATATTGCAGGTGGAGCC 6378 Query 2064 GTAAAAATCCTATCTAAATTACTAACTAAATTGTGATATTGTAATACAAAATCTTTGGGA 2123 || ||| |||| |||||| | ||| | ||| | |||| | ||||||| || Sbjct 6377 TGGAATATCATATCCAAATTAGCATTTAATCTATGAAAACGTAAATAATAATCTTTTGGG 6318 Query 2124 GCCTTTTCTCTTAAAATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCA 2183 ||||| || | || | | ||| || | ||| ||||| ||||| | || || || Sbjct 6317 CGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTAGACCCAGAATTTAGGGCTTCTGCG 6258 Query 2184 TATGCATCGTTGGCAGATTGGCAACCTCCTC------TAGCTGATCGTCCATCGATCTGG 2237 || |||| || || ||||| ||| |||| | || |||| |||||| |||||| Sbjct 6257 TAAACATCATTAGCCGATTGTTGACCCCCTCTTGTAGTTGCAGATCTTCCATCCATCTGG 6198 Query 2238 AAAACTCCAAAATCAACGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGACGAG 2297 || |||| |||||| ||||||| ||||| | ||| | || || | | ||| Sbjct 6197 AATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCGATATACGACTTCACGT---AGGAG 6141 Query 2298 CT---CTTAGCTCCCTGAATGTTCGGATGGAAATGGGCTGACCTGGTTGGGGAAACCAGG 2354 || ||| ||||||| ||||| ||||||||||| | |||||||||||| || || || Sbjct 6140 CTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTTGACCTGGTTGGAGAGACAAGA 6081 Query 2355 TCGAAGAATCTGTTGTTTTGACATTTGAATTTGCCTTCGAACTGGATGAGCACGTGTAGA 2414 |||||||||||||| || ||| || | || |||||||| ||||| |||||||| ||| Sbjct 6080 TCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCGAATTGGATAAGCACGTGGAGA 6021 Query 2415 TGAGGTTCCCCATTTTCGTGCAATTCCCGTGAAACCCGAATGAATTTCTTCGAAGTTGGG 2474 ||||||||| ||||| || ||| | ||| | ||| ||||||| |||| Sbjct 6020 CGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTGATGTATTTCTTGTTTACTGGG 5961 Query 2475 GTTTCTAGGGTTTG--CAATTGGGAAAGTGCCTCTTCTTTAGTTAGAGAGCACTTTGGAT 2532 || | |||| |||| |||| || || || || ||||| || |||||||| | |||| Sbjct 5960 GTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTTTTGTAAGAGAGCAGTGGGGAT 5903 Query 2533 AAGTGAGGAAATAGTTTTTGGCATATATTTGAAAACG 2569 | || || ||| ||||| | | | || ||||||| Sbjct 5902 ATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACG 5866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8569083738780