Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025265.1 Length=2564 Score E Sequences producing significant alignments: (Bits) Value seq9745 394 1e-106 >seq9745 Length=7305 Score = 394 bits (436), Expect = 1e-106 Identities = 687/988 (70%), Gaps = 43/988 (4%) Strand=Plus/Minus Query 1474 GTCAAGGAACTCTTTATAACTAGCCCCCTCTCSTGGATTGCAAAGCACGATTGATGGGAT 1533 |||||| |||||||||||||| | || |||||||||||| | ||||| || || Sbjct 6804 GTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAGGAAGATTGTGGGCAT 6745 Query 1534 TCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGCTTTGCCAGTCACGTTGGGA 1593 || ||||||| || || |||||||||||| | | || ||||| |||| || || Sbjct 6744 CCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTGCCAATCACTTTTGGC 6685 Query 1594 CCCAATTAGCTCTTTCCAGTGTTTCATTTTTAGGTATTGCGGAGTGACATCATCAATGAC 1653 ||| || | || || | ||||| || || ||||| || | ||||||||| Sbjct 6684 CCCCATGAATTCCTTAAAATGTTT------TAAATAACGCGGATCAACGTTATCAATGAC 6631 Query 1654 GTTATATTCCA--CTTCATTTGAATAAACTTTAGAA-TTAAAGTGTAGATGTCCACTCAA 1710 ||| || ||| | ||||| || ||| | ||| | || ||| || | || Sbjct 6630 GTTGTA--CCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATA-ATGACCGCATAA 6574 Query 1711 GTAATTATGTGAACCTAATGCACGGGCCCACCTCGTCTTCCCCGTCCTTGAATCACCCTC 1770 |||||| |||| ||||||| | ||||| | || ||||| || || | ||||| || Sbjct 6573 GTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTCACCTTC 6514 Query 1771 AATGATTATACTAATAGGTCTCTCTGGCCGCGCAGCGGCACCCCTTCCGAAATATTCATC 1830 | | |||||| ||||||| | |||| | ||| ||||| | || | ||| || Sbjct 6513 TACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACG---TTTTCTTC 6457 Query 1831 AGCCCACTCTTGCATCTCGTCAGGCACGTTAGTGAAAGATGAGAGTGGAAAC----GGAG 1886 | |||| ||||| | || || ||||| || ||| | | |||| || |||| Sbjct 6456 AACCCAGTCTTGAAGAATCTCCGGTACGTT-GTTAAATGT---ACTGGATACAAAAGGAG 6401 Query 1887 GAACCCATTGTTCAGGAGGCTTATTAAAAATCCTATCTAAATTGGAATTTAAATTATGAT 1946 ||| || | |||| || | || ||| |||| ||||| | |||||| ||||| Sbjct 6400 AAACATATATTGCAGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATGAA 6341 Query 1947 ATTG-AAATAAATATTTCTCGGGAAGTTTTTCCCTTATTATTTGCATAGCGGATTCTTTA 2005 | | |||||| || | | ||| |||||||||| ||||| | | || | | |||| Sbjct 6340 AACGTAAATAATAATCTTTTGGGC-GTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTTA 6282 Query 2006 GAAGGGGCGTTTAATGCCTCTGCTGCGGCGTCGTTAGCCGTTTGCTGACCTCCTCTAGCA 2065 || | |||| || ||||| | || ||||||| ||| ||||| ||||| | | Sbjct 6281 GACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGTA 6222 Query 2066 CTT------CTACCGTCGATTTGGAATTCTCCCCATTCAAGAGTATCTCCGTCTTTATCG 2119 || || || || || |||||||||||||| |||| |||||||||| || ||| Sbjct 6221 GTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTCG 6162 Query 2120 ATATAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2179 ||||| ||||| |||| ||| |||||| ||||||| ||||| ||||||||||||| | Sbjct 6161 ATATACGACTTCACGTAGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATGTGTT 6102 Query 2180 GATCTTGTTGGGGATACCAGGTCGAAGAATCTATTATTCGTGCATTGGTATTTACCTTCG 2239 || || ||||| || || || ||||||||||| |||||||||||| ||| || |||||| Sbjct 6101 GACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCCTTCG 6042 Query 2240 AATTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCGTGAAGTTCTCTACAGATCTTG 2299 ||||||||||||||||||||| |||| |||| || || ||| |||||| || |||||| Sbjct 6041 AATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAATCTTG 5982 Query 2300 ATGAATTTCTTGTTGGTTGGTGTCTGTAAGGCTTG--TAATTGGGAAAGTGCGTCTTCTT 2357 ||| |||||||||| ||| || | || | ||| ||||| || || || || |||| Sbjct 5981 ATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCCTCTT 5924 Query 2358 TAGTGAGAGAACATTTAGGATATGTGATGAAATAGTTTTTGGAAGATATCTTAAAACG-- 2415 | || ||||| || | |||||||| | ||| ||||| ||||| || |||||| Sbjct 5923 TTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTTAGAAGAAATGCGAAAACGAG 5864 Query 2416 --CTTGGGGAGTGGCATATTTGTAAATA 2441 || | |||||||||||||| || Sbjct 5863 AACTCG----TTGGCATATTTGTAAGTA 5840 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8020637017800