Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lactuca_20sativa_20[genbank_20GCA_5F000227445.1_202011-10-04] 876,110 sequences; 1,133,657,130 total letters Query= NC_025680.1 Length=2763 Score E Sequences producing significant alignments: (Bits) Value seq9745 518 6e-144 >seq9745 Length=7305 Score = 518 bits (574), Expect = 6e-144 Identities = 721/1004 (72%), Gaps = 22/1004 (2%) Strand=Plus/Minus Query 1588 GAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGA 1647 ||| | ||||| | |||| ||||| |||||| |||||||||| || | | Sbjct 6879 GAATAATGGCTGGGTGAGGAATGCGAAGACTGCATTTATGAGAGCCCAGGACTTAATAGC 6820 Query 1648 AAAGtttttttCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAG 1707 ||| || |||||||| ||| | || |||| ||| | |||||||||||||| || Sbjct 6819 TGCGTTCTTATCTTCGTCAAGAAACTCTTTATAACTTGAGTTGGGTCCTGGATTGCAAAG 6760 Query 1708 GAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTG 1767 |||||| ||||| || || ||||||| || || |||||| ||||| || | || || Sbjct 6759 GAAGATTGTGGGCATCCCGCCTTTAACTTAAAAGGGCTTTCCGTATCTTCTATTATACTG 6700 Query 1768 CCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTC 1827 ||| || || | |||||||||||||||||| || || ||||||||| |||| || |||| Sbjct 6699 CCAATCACTTTTGGCCCCCATGAATTCCTTAAAATGTTTTAAATAACGCGGATCAACGTT 6640 Query 1828 ATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCC 1887 |||||||||||||||||| |||||||| ||||| |||||||||| || ||| || Sbjct 6639 ATCAATGACGTTGTACCAGGCATCATTGTTGTACGTTTTTGGGCTTATATCATAATGACC 6580 Query 1888 ACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTACTATC 1947 ||||| ||||| |||||||||| || || ||||| |||||||| || |||||| || Sbjct 6579 GCATAAGTAATTGTGTGGGCCTAATGATCTAGCCCATATTGTTTTCCCAGTTCTAGCCTC 6520 Query 1948 ACCTTCAATGACAATACCTATGGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTC 2007 |||||| | || |||| || |||| |||| | ||| || | || ||||| || Sbjct 6519 ACCTTCTACAACTATACTCATAGGTCGGTGAGGCCTCCCAGAGGCACTCACAACGTTTTC 6460 Query 2008 GGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGA 2067 | ||||| |||| ||| || || || | ||||| | | || | ||| ||||| Sbjct 6459 TTCAACCCAGTCTTGAAGAATCTCCGGTACGTTGTTAAATGTACTGGATACAAAAGGAGA 6400 Query 2068 AACATAAACTTCTAAAGGAGGA--CT-AAAAATCCTATCTAAATTTGAATTTAAATTATG 2124 |||||| | | | ||| ||| || || ||| |||| ||||| | |||||| |||| Sbjct 6399 AACATATATTGC---AGGTGGAGCCTGGAATATCATATCCAAATTAGCATTTAATCTATG 6343 Query 2125 AAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTT 2184 ||| ||||| ||| || |||||| || || | | ||| | | ||| | | ||| Sbjct 6342 AAAACGTAAATAATAATCTTTTGGGCGTTTTTCCCTAATTATCTCTAAGGCTGCTGTTTT 6283 Query 2185 ACTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTC---- 2240 | || ||||| || ||||| || || | || || || ||||| ||||| |||| Sbjct 6282 AGACCCAGAATTTAGGGCTTCTGCGTAAACATCATTAGCCGATTGTTGACCCCCTCTTGT 6223 Query 2241 --TAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTTTC 2298 | || ||||| ||||| || ||||| |||| ||||||| ||||||| || || Sbjct 6222 AGTTGCAGATCTTCCATCCATCTGGAATTCTCCCCAATCAATTGTATCTCCGTGCTTCTC 6163 Query 2299 CACGTAGGTCTTGACATCTGTTGAGCT---CTTAGCTGCCTGAATGTTTGGATGGAAATG 2355 | || | ||| || | ||||| ||| || |||| ||||||||||||||||| Sbjct 6162 GATATACGACTTCACGT---AGGAGCTGGATTTACCTCCCTGTATGTTTGGATGGAAATG 6106 Query 2356 TGCTGACCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCC 2415 || ||||||| |||| || || || |||||||| | | ||| | ||| ||| || || Sbjct 6105 TGTTGACCTGGTTGGAGAGACAAGATCGAAGAATCTGTTATTCGTGCATGTGTACTTCCC 6046 Query 2416 TTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAATTCTCTGCAAAC 2475 |||||||||||||||||| |||||| | ||||||| || || || ||||||||||| Sbjct 6045 TTCGAATTGGATAAGCACGTGGAGACGAGGTTCCCTGTTTTCATGAGCTTCTCTGCAAAT 5986 Query 2476 TTTGATGTATTTTTTATTTGTTGGGGTTTCTATGTTTT--TTAATTGGGAAAGTGCTTCC 2533 ||||||||||| || ||| |||||| | || ||||| ||||| || || |||||| Sbjct 5985 CTTGATGTATTTCTTGTTTACTGGGGTATTTAGGTTTTGAATAATT--GAGAGAGCTTCC 5928 Query 2534 TCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTCTT 2577 ||||| | ||||| || | |||||||||||| ||| ||| || Sbjct 5927 TCTTTTGTAAGAGAGCAGTGGGGATATGTTAGAAAAATATTTTT 5884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8651509257540